Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8308g00001 ATGGAGAATCCGAAGGAGCAGGCAGAGCAAAGGGTCAATTTCATCGGAGACACTCCAAACCCTCACACTCACGACAATGGCAACAACGGCTTCAACCACTTCCAACCCTTACCAGCTGTCGATTCTGGATACGCTCTTAACCATTCCATTTGTCGCCTTCCTCGCAAACGCCCTTGGCATCATTCCAACCAAGGAACTTCTCCAGGCACTACCAATTTTCTTTCACTTTTTTATTTATTTATAACCGAAATATTATTCGCCTTCCTTCTCGCAGATCAAGTGGACGGTTCATGTCATGTGAAAGTTTATGTTGCACCTGTTCCAAGAACTGCATCGGAGGCTGATATCCGCCTTGTATTCGAAGGACATGGAACTATTGTTGAGGTTGTTCTTTTAAAAGATAAGAGAACTGGTGTACGACAAGGAAGTTGTTTTGTGAAATATGCAACATTTGATGAAGCTGACAGGGCTATTAAGGCTTTAAGCAATCAATATACATTTCCTGGGGAATCATTTCCTGTTGTTGTCAAATTTGCTGATCGAGAACTTGAACGTCTTGAGGTGGCAGATAAAGTTTTTGTTAGTTCCATCAACAAAGAAGCATCAAAAAAGGAAATTGAAGAAATATTTTCTCCTTATGGGCATGTGGAAGATATCTTCATTGCGCACAGTCGTGGATATGCTTTTGTCAAATTTTCTAATAGAGAAATGGCATCGGCTGCAATCAAAGGGCTGAATAGAATCTTCACGATGAGAGTAAAGCTATTTTATTTAATTGATACATATTACTCTGTCCACTTTCGACTGCTAGCTAAAGGTTGTGATCATCCGTTAATTGTTCGTTTTGCGGATCCTAAGAAACCTAAGACTGGAGAATCA 879 0.405 MENPKEQAEQRVNFIGDTPNPHTHDNGNNGFNHFQPLPAVDSGYALNHSICRLPRKRPWHHSNQGTSPGTTNFLSLFYLFITEILFAFLLADQVDGSCHVKVYVAPVPRTASEADIRLVFEGHGTIVEVVLLKDKRTGVRQGSCFVKYATFDEADRAIKALSNQYTFPGESFPVVVKFADRELERLEVADKVFVSSINKEASKKEIEEIFSPYGHVEDIFIAHSRGYAFVKFSNREMASAAIKGLNRIFTMRVKLFYLIDTYYSVHFRLLAKGCDHPLIVRFADPKKPKTGES 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8308g00001 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 181 IPR000504 GO:0003723
Mupr8308g00001 293 Gene3D - 97 188 IPR012677 -
Mupr8308g00001 293 Gene3D - 189 258 IPR012677 -
Mupr8308g00001 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 285 IPR000504 GO:0003723
Mupr8308g00001 293 PANTHER RNA BINDING PROTEIN 48 289 - -
Mupr8308g00001 293 SMART rrm1_1 191 254 IPR000504 GO:0003723
Mupr8308g00001 293 SMART rrm1_1 101 177 IPR000504 GO:0003723
Mupr8308g00001 293 SUPERFAMILY RNA-binding domain, RBD 21 179 IPR035979 GO:0003676
Mupr8308g00001 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 169 IPR000504 GO:0003723
Mupr8308g00001 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 250 IPR000504 GO:0003723
Mupr8308g00001 293 SUPERFAMILY RNA-binding domain, RBD 188 254 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8308g00001 Mupr-Chr8308 1251 6533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8308g00001 102 249 Eukaryotic Initiation Factors Gene Family AT1G49760 28.105 1.76e-11 62.8