Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8305g00005 ATGGAGCAACCCTCTTGTTCATCAACAATGTTTCAAACAACCTGCATTTTACTCTTCTTCATTTTCCCCTTATTTTTACCTCATGCAACAGCAACGCTTAACCTCACTCTGCCAGGACAACACCCAGACCCCGAAGCCGTTGCACGACAACTTCATAGAAAGGTGAATGCTTCAATTGTAAGAAGGGAAATGCTGGGAGTGTCGGAGACTTGTCTCACAGGGAACCCCATTGATGATTGTTGGAAATGTGACCCAGATTGGGCCAACAACAGACAGAGGCTAGCCGATTGTGCAATTGGGTTTGGGCAAAACGCAAAGGGAGGAAAAGGTGGCCAATTTTACATAGTCACAGATTCCTCAGATGAGGACCCTGTGAACCCTAAACCTGGCACGCTTAGATATGCTGTCATACAGAATGAGCCACTCTGGATTGTCTTCCCCTCTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTTAACAGCTACAAAACCATTGATGGCCGTGGTGCTGATGTCCACATTGTCGGTGGAGGCTGCATTACTCTTCAGTATATTAGTAATGTCATCATACACAACATTCACGTTCACCATTGTCATCCTTCTGGTAACGCTAACGTGCGGTCGAGCCCAGAGCACTACGGGTACCGCACGGAATCGGACGGCGACGGAATCTCGATATTCGGGTCTCGCGACATCTGGATCGACCACTGCACACTCTCGCGCTGCAAGGACGGTCTGATAGACGCAGTGATGGGATCAACGGCGATAACCATATCGAACAACCACTTCTCGCACCACAACGACGTGATGCTGCTGGGGCACAGCGACCACTACCTCCCCGACTCGGGCATGCAAGTAACCATCGCATTCAACCACTTCGGCGAGAATCTGGTCCAGCGCATGCCACGTTGCAGGCTCGGGTACATCCACGTGGTGAACAACGACTTCACGCGCTGGGAGATGTACGCCATCGGGGGCAGTGCCAACCCCACGATTAACAGCCAGGGAAACCGTTACACTGCGCCCGAGGATCCATACGCCAAGCAAGTCACCAAGAGGCTCGACGCTGGGGAAGAGGTTTGGAGCGCCTGGAATTGGAGGTCCGAAGGAGATGTTATGTTCAATGGCGCCTTCTTTGTTCATTCCGGAGCTGATGCCGAACCTAATTACCACAAAGCCTACAGCACCGAACCTAAGTCCGTGGATCGCATTTCGCTCCTTACCATGTCCGCTGGTGTTCTCGGTGTTGCCAGGGACAATAATCTGGGAATGTGGACCAGAGGGCCCAATGATGGTGCTGTTTATTTTTCAGATTCGAGCCCAGAATACACGGACGACATGTCCCGGAGTACTTTGAGTCTTGTATCTGGATTTCTTACATTCTTCTGCCTCTTATTATGTCATACAACACTTCTATAA 1422 0.5028 MEQPSCSSTMFQTTCILLFFIFPLFLPHATATLNLTLPGQHPDPEAVARQLHRKVNASIVRREMLGVSETCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGQNAKGGKGGQFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSGMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSANPTINSQGNRYTAPEDPYAKQVTKRLDAGEEVWSAWNWRSEGDVMFNGAFFVHSGADAEPNYHKAYSTEPKSVDRISLLTMSAGVLGVARDNNLGMWTRGPNDGAVYFSDSSPEYTDDMSRSTLSLVSGFLTFFCLLLCHTTLL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8305g00005 473 Gene3D - 74 416 IPR012334 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Mupr8305g00005 473 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Mupr8305g00005 473 FunFam Pectate lyase 74 416 - -
Mupr8305g00005 473 SMART amb_all 149 346 IPR002022 -
Mupr8305g00005 473 Pfam Pectate lyase 158 338 IPR002022 -
Mupr8305g00005 473 PANTHER PECTATE LYASE 18-RELATED 38 418 IPR045032 GO:0030570
Mupr8305g00005 473 SUPERFAMILY Pectin lyase-like 75 403 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8305g00005 Mupr-Chr8305 20763 24725 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8305g00005 10 471 Polysaccharide Lyase AT3G53190 69.456 0.0 651