Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8229g00006 ATGATGCAGCCAGGACCCGGCATGGCTCCTCCCAGCATGGGCCAGCAGCCGCCGCAGCAGTATCAACAGCAGCCGCCGCAGCAGCAGCCATACGTCATGATGCCACCGCAGCCCCAGGCGCCGCCACCCATGTGGGCCCCCTCCGCTCAGCCCCCACCTCAGCAGCAGCCCGCCAGCGCCGATGAGGTCCGAACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAGAACTATCTCTACACGTGCTTTGCTCATACCGGCGAGGTTACGTCCGTTAAAGTGATCAGAAACAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTAATAGCCGTGCTGGAGCTGAGAGAGTTCTTCAAACATATAACGGGGCCATTATGCCTAACGGGGGGCAAAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCTGGTGAAAGGCGTCATGATGATTCTCCAGACTATACCATATTTGTCGGTGATTTGGCTGCAGATGTTACTGATTACCTCCTTCAAGAGACATTTAGGGCTCGTTATAATTCAGTGAAGGGTGCAAAAGTGGTTATTGATAGGCTAACTGGAAGGACTAAGGGATATGGCTTTGTAAGATTTGCAGACGAGAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCAATGAGGATTGGACCAGCCAGTAATAAAACCCCTGCCACTCAGTCTCAGCCGAAAGGGTGTCAAGAGGCTCTGTCATCTCGGAGCCTGGAACTGATTTCAGCTGAAATGGTTACCATTTTAGTGCCCTCGTATCAGAATTCTCAACCTCAAGGCTCACAAAACGAGAATGATCCAAATAATACAACTATCTTTGTTGGCAATTTGGATCCCAATGTCACTGATGATCATCTGAGGCAAGTATTTGGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTGTGCTGAAGAGGCGCTTCGGTCGTTAAATGGGACGCTATTGGGTGGACAAAATGTTCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAATCAGTGGAATGGTGGTGCTGCTGCTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTACCCTAGTTACCAACCACCTCAGCAACAGCAGCAAATAGGATATAGTTGA 1278 0.4945 MMQPGPGMAPPSMGQQPPQQYQQQPPQQQPYVMMPPQPQAPPPMWAPSAQPPPQQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERVLQTYNGAIMPNGGQSFRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQSQPKGCQEALSSRSLELISAEMVTILVPSYQNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRSLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGGAAAGYYGYAQGYENYGYAPAGQDPNMYGSYPGYPSYQPPQQQQQIGYS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8229g00006 425 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 55 365 - -
Mupr8229g00006 425 Gene3D - 9 154 IPR012677 -
Mupr8229g00006 425 MobiDBLite consensus disorder prediction 411 425 - -
Mupr8229g00006 425 Gene3D - 156 232 IPR012677 -
Mupr8229g00006 425 MobiDBLite consensus disorder prediction 405 425 - -
Mupr8229g00006 425 MobiDBLite consensus disorder prediction 1 61 - -
Mupr8229g00006 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 222 IPR000504 GO:0003723
Mupr8229g00006 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 354 IPR000504 GO:0003723
Mupr8229g00006 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 131 IPR000504 GO:0003723
Mupr8229g00006 425 MobiDBLite consensus disorder prediction 14 28 - -
Mupr8229g00006 425 CDD RRM1_SECp43_like 65 145 - -
Mupr8229g00006 425 CDD RRM2_SECp43_like 156 235 - -
Mupr8229g00006 425 SUPERFAMILY RNA-binding domain, RBD 152 244 IPR035979 GO:0003676
Mupr8229g00006 425 Gene3D - 270 370 IPR012677 -
Mupr8229g00006 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 144 IPR000504 GO:0003723
Mupr8229g00006 425 SMART rrm1_1 290 357 IPR000504 GO:0003723
Mupr8229g00006 425 SMART rrm1_1 158 232 IPR000504 GO:0003723
Mupr8229g00006 425 SMART rrm1_1 65 140 IPR000504 GO:0003723
Mupr8229g00006 425 SUPERFAMILY RNA-binding domain, RBD 267 390 IPR035979 GO:0003676
Mupr8229g00006 425 FunFam Polyadenylate-binding protein RBP45 10 148 - -
Mupr8229g00006 425 FunFam Polyadenylate-binding protein RBP45C 149 241 - -
Mupr8229g00006 425 MobiDBLite consensus disorder prediction 29 54 - -
Mupr8229g00006 425 SUPERFAMILY RNA-binding domain, RBD 27 145 IPR035979 GO:0003676
Mupr8229g00006 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 236 IPR000504 GO:0003723
Mupr8229g00006 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 361 IPR000504 GO:0003723
Mupr8229g00006 425 FunFam Polyadenylate-binding protein RBP45C 267 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8229g00006 Mupr-Chr8229 21120 25030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8229g00006 63 368 Eukaryotic Initiation Factors Gene Family AT2G23350 26.688 1.57e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8229g00006 - - gmx:100801562 623.624