Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8224g00002 ATGAAGAGGTCTAGGGATGATGTTTACACGAGTTCACAACTCAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGCCGAGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTGGCATATCTCAAGGCAGTAAAGGACATGTTTCAAGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACGACAGGTGTCATAGCAAGAGTGAAGGAGCTGTTTAAAGGGCATAGTGATCTAATTTTGGGGTTTAATGCCTTCTTGCCAAAGGAATATGAAATCAAACTTACATTGGAGGATGAACAACCTCCACAAGAGAAGCATGATGCTTTTGTAGAAGCCATAAGTTTTGTGGGCAGGATTAAGATTCGTTTTCAAGGCGATGACCGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACCAAGTCTATCACTGAGGTTTACCAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGATCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCAGGAGCAGCCTCTACTAACTATGCTTCTGCTCGAAATTCTCTCCTTCGTGATAGGAGCTCTGCAATGCCAACAGCGAGGCAAATGCATGCCGAGAAGAGAGAAAGGATGTTTGGTCCTGCAGGTTTGCATGGTGATCGTGACCTCAGTGCTGTGGACCATCCTGATCCAGAACTTGACAGATGTTTGATCAGGGCTGATAAGGATCAGAGAAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAGAGAGACAGGAGACAACGGGAAAGGGATGATAGAGATTATGATCATGATGGGAGTAGGGAGAATTTATCTCACAAGCGGAAATCTAGTTGTAGGGCTGAAGACTCTGGTGCTGAACCATTGCATGATACTGACGAAAATTTTGGCATGCACCCTATCTCATCTGCTTGTGATGATAAAAGTTCTTTGAAAAGTATGTATAGTCCGGTGCTGGGCTACCTTGACAAAGTGAAGGAAAAATTACGAAATCCTGAGGATTTCCAGGAATTTTTGAAGTGCCTAAATATCTACAGCAAGGAAATAATTGCCCGACATGAATTGCAATCATTGGTATGGTTTATGCATTTAACTTTTAATAGCTTCTTTTCTGGTTTTGTTGAAATCGATACTGTTGAATTTAATTTGGCTGGCGTGAGCAATTTACTGGGAAAATATGCAGATCTTATGGAGGGATTTAATGAATTTTTGGCTCAATGTGAGAAGAACGTTTGTCATGCAGAAGGACTCCTTTCTAGTCTCCTGAAAAGAAAGTCCTTTTGGCATGAAGGACATGGACCAAAACCAATGAAGGTAGAGGACAGGGATCGAGATCGTGATAGGGATGATGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGGGACAAATCCAATGCAATTGCTAACAAGGATGTTTCAGTTCCTAAGATGTCTCAGTATGCCAGCAAGGATAAGTATGCAGCAAAACCTATAAATGAGCTGGATCTTTCTAATTGTGAACAATGTACTCCCAGTTACCGTCTTCTACCAAAAAATTACCCAATACCACCAGCAAGCCAGAGAACAGAACTTGGTGCAGAGGTATTGAATGATTACTGGGTTTCTGTTACTTCTGGCAGTGAGGACTATTCCTTTAAACACATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGATATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAAGAACTCTTAGAAAAGATCAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCTCTAAATCTTAGGTGCATCGAACGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATACTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTATCACAAATCACTTGATCACCGTAGTTTCTACTTTAAGCAGCAGGATACAAAAAGCTTGAGCACTAAAGTCTTACTGGCAGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCTATTATTCCTCACTTGGAATTTGTGTATCCTGATCCGGAGATTCATGAAGATCTGTATCAACTCATAAAATATTCCTGTGGGGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCCATGCTTGGAGTTCCTTCTCGACCACAAGGTCCTGAGGATACAGAAGATGTTGTCAACGCTAATAATAATTCTGCCAAAAGTGGCACTGCAATTGCTGGTGGTGATGGTATTCCTGTAATGAATCCTAAGAATTTAAACACTAATAGAAATGGGGATGAGAACTTTCCATTAGAACAATCAAATTCCTGCAAACAATGGCAAACAAGTGGGGATAATAAGGTTAAAGAGGGTAATTATCTTGATTCAGACCGCTCTGCACATAAGACTGAAACATTGGGAAGTTGTACACAGCAGGGTAAATTGCATAATTCATCCATGCCTGATGAAGTGTCAAGAGCCAATAAGCAAGATCATTCCATTGAACGATTGGTGAATGCTAATGTCTCACTGTCCTCGGGTATGGAGCAAAGCATTAGAAAAACGAATGTAGATAATTCATCAGGACTTACTGCTACTCCTCCATCAAGACCTGGTAATGTTTCTAGTGAGGGAGGGTTTGATTTACCTTCATTAGAGGGTGCTGATTCTACAAGACCAGTTACAGCCACAAATGGGGCCATCATTGAGGATACTAAGGTTCGCAGATATTGCGAAGAATCAGTGGGACACTTCAAAACTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTCTGAAGAGGATAACTTTGCAGTTTATGGACATGCTGGTTTGGAGGCAGTTCATAAAGGAAAAGATGGTACCATTTGTCGACAATATCAAAATAGACATGGGGAAGAAGTTTGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGTGAAGAAAGTCCCCATAGATCATTGGAGGACAGTGAAAATGCTTCTGAAAATGGTGATGTTTCTGGTACCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAACACGAGGAGGATGGGGATCATGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATGGCTGATGCCAATGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTGTCACTGTAAAGCCTCTGGCAAAACATGTTCCCCCAGTGTTGCATGAGAAAGAAAGGACTGTTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTGTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCTGCAAAGGTTAACTCATCATCTGCTGAAAGGAAGTGGAGGGCTTCAAGTGATACAAGCTCTACTGATCAATATGGCAGGTTTATAAACGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAGTCATATGTCTTATTCACATTAGATAAGCTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCACTGATGAGATGGACAACAAGCTTCTTCAACTATATGCATATGAAAAATCAAGAACACCTGGAAGATTCGTTGATATAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAATATGTATCGTATTGAATGTTCACCTGCACCTACCCAATTATCTTTTCAACTGATGGACTATGGATATGATAAACCTGAAGTGACTGCTGTGTCAATGGACCCGAATTTTTCCGCTTATTTGCATAATAACTTCATATCGGTTGTCCCTGACAAAAAGGAGAAGTCGGGAGTTTTCCTAAAGAGGAATAAGCGCAAGTATGACAGTAGTGATGAATTTTCAAGCCAGACCATAGATGAACTACAAATTGTCAATGGTCTAGAGTGTAAGATAGCTTGCAATTCGTCTAAGATACTGAAGATTTTTTATATCGAACAAGAAGAAAAAGAAGAACCTTGCATCCGAGCAATTCACACCATGAACAGGCAAAGTCCTCAATCATTTGTTCAAGCAGAGTACAACGATTCTGCAAATTATTTTCAATTTGATGATGTTTGTTATCCATCAGTGTTTTTGGTCATGCATCAATGGCAGACAGAGGTGCCAGACGGAAATGACGTCCCATCC 4422 0.4064 MKRSRDDVYTSSQLKRPMVSSRGEPSGQPQMPSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHSDLILGFNAFLPKEYEIKLTLEDEQPPQEKHDAFVEAISFVGRIKIRFQGDDRVYKSFLDILNMYRKETKSITEVYQEVAALFQDHADLLEEFTHFLPDTSGAASTNYASARNSLLRDRSSAMPTARQMHAEKRERMFGPAGLHGDRDLSAVDHPDPELDRCLIRADKDQRRRGEKEKDRREERDRRQRERDDRDYDHDGSRENLSHKRKSSCRAEDSGAEPLHDTDENFGMHPISSACDDKSSLKSMYSPVLGYLDKVKEKLRNPEDFQEFLKCLNIYSKEIIARHELQSLVWFMHLTFNSFFSGFVEIDTVEFNLAGVSNLLGKYADLMEGFNEFLAQCEKNVCHAEGLLSSLLKRKSFWHEGHGPKPMKVEDRDRDRDRDDGMKERDRECRERDKSNAIANKDVSVPKMSQYASKDKYAAKPINELDLSNCEQCTPSYRLLPKNYPIPPASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPMLGVPSRPQGPEDTEDVVNANNNSAKSGTAIAGGDGIPVMNPKNLNTNRNGDENFPLEQSNSCKQWQTSGDNKVKEGNYLDSDRSAHKTETLGSCTQQGKLHNSSMPDEVSRANKQDHSIERLVNANVSLSSGMEQSIRKTNVDNSSGLTATPPSRPGNVSSEGGFDLPSLEGADSTRPVTATNGAIIEDTKVRRYCEESVGHFKTEREEGELSPNGDSEEDNFAVYGHAGLEAVHKGKDGTICRQYQNRHGEEVCGEAGGENDADDEGEESPHRSLEDSENASENGDVSGTESADGEECSREEHEEDGDHEHDNKAESEGEAEGMADANDVEGDGASLPYSERFLVTVKPLAKHVPPVLHEKERTVRVFYGNDSFYVLFRLHQTLYERIQSAKVNSSSAERKWRASSDTSSTDQYGRFINALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYAYEKSRTPGRFVDIVYHENARVLLHDENMYRIECSPAPTQLSFQLMDYGYDKPEVTAVSMDPNFSAYLHNNFISVVPDKKEKSGVFLKRNKRKYDSSDEFSSQTIDELQIVNGLECKIACNSSKILKIFYIEQEEKEEPCIRAIHTMNRQSPQSFVQAEYNDSANYFQFDDVCYPSVFLVMHQWQTEVPDGNDVPS 1474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8224g00002 1474 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Mupr8224g00002 1474 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Mupr8224g00002 1474 Gene3D Paired amphipathic helix 337 436 IPR036600 GO:0006355
Mupr8224g00002 1474 SMART hdac_interact2seq4b 526 626 IPR013194 -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 886 907 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 1 39 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 231 327 - -
Mupr8224g00002 1474 Pfam Sin3 family co-repressor 528 619 IPR013194 -
Mupr8224g00002 1474 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Mupr8224g00002 1474 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Mupr8224g00002 1474 Pfam Paired amphipathic helix repeat 361 431 IPR003822 GO:0006355
Mupr8224g00002 1474 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Mupr8224g00002 1474 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 460 493 - -
Mupr8224g00002 1474 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Mupr8224g00002 1474 Pfam C-terminal domain of Sin3a protein 1167 1403 IPR031693 -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 11 39 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 231 321 - -
Mupr8224g00002 1474 Gene3D Paired amphipathic helix 122 194 IPR036600 GO:0006355
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 938 956 - -
Mupr8224g00002 1474 Coils Coil 595 615 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 838 872 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 1052 1133 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 1000 1020 - -
Mupr8224g00002 1474 SUPERFAMILY PAH2 domain 121 192 IPR036600 GO:0006355
Mupr8224g00002 1474 PANTHER SIN3B-RELATED 38 1311 IPR039774 GO:0003714
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 1065 1079 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 824 917 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 1092 1120 - -
Mupr8224g00002 1474 SUPERFAMILY PAH2 domain 342 433 IPR036600 GO:0006355
Mupr8224g00002 1474 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Mupr8224g00002 1474 MobiDBLite consensus disorder prediction 938 983 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8224g00002 Mupr-Chr8224 7698 19170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8224g00002 28 119 WRKY Transcription Factor Family AT4G12020 59.574 2.38e-24 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mupr8224g00002 Sin3a_C 3.3e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8224g00002 K11644 - gmx:100781798 2255.33