LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8216g00001	ATGGGTTCCATTTCCAAAGAGATTAAAGTTCCCACTGAGGTGGATGATCCTTACCTCTCTGCTGTCTTACTTTGTTTTAGCCGGGTTTTGCCTTCAATCTTAAATGCTGCTATTGATCTNNCACAAACATCATCTGCTTCTACTTTTTCTGCCTCTCAAATTGCTTCTCTGCTTCCAAATCAACATCCACACTTGCCTATTAGACTTGAACGCATATTGCCTGTGCTCGCAAGTTATTCTCTTCTTAATTGCTCCATTCGCACCTATGATGATGGTAAGAGAGAAAGAGTTTATGCACTCTCACCCATTGGTGCTTACTTTGCATTTGACAATGAAGGAACCTCTTTGGCTCCTCTCTCAACTTTAGATGCTAAGGATGCAATTCTAGAGCCTAATTGCAATACCCATTTCGAAAATGTTTATGGAATGCCTTTATTTCAATATATGGAAAGAAACACAGAGCTGAATAACATTTTTTTCAAAGCAATGGCTCATGCTGGCCCAATAGAACTTGAAAGGGTACTCAAATTATATAAAGGATTTGAGGGAGTGTCAACACTGGTTGATGTAGGAGGTGGAGTAGGAGAGAACTTAAAACAGATTGTCTCTGCATATCCTTCAATTAAAGGAATTAATTTTGATTTGCCTCAGATGATTCAAGATGCACCACCTCATCCAGGTATAGAGCATATTGGAGGAGATATGTTTATAAGTGTTCCAAAGGGTGATGCCATTTTCCTAAAGTTTGTATGTCATAATTGGCCAGATGAAGATTGTATCAAGTTTTTAAGAAATTGTCATAAAGCTTTGCCACAACATGGAAAAGTCATTGTTTTGGAATATATAATTCCGGAGGTCCCAAATTCAAGCGACATATCCAAGCATACTTGTATCGTCGACAATCTCATGTTTTTGGCACATGGTGGAAAGGAAAGAACTGAGAATGAATTTAAGAACTTGTGCAAGAACTCTGTAAGAATGGGTTCCATTTCCAAAGAGATCAAAGTTCCCAGAGAGGTGGATGATCCTTACCTCTCTGCTGCCTTACTTTGTTTTAGCCGGGTTATGCCTGCAATCTTAAATGCTGCTATTGATCTTAATTTATTTGATATCATTGCTAAGACACAAACATCATCTGCTTCTACTTTTTCTGCCTCTCAAATTGCTTCTCTGCTTCCAAATCAACACCCACACTTGCCTATTAGACTTGAACGCATATTGCCTGTGCTCGCAAGTTATTCTCTTCTTAATTGCTCCATTCGCACCTATGATGATGGTAAGAGAGAAAGAGATGTGAAGAATGCAATTCTGGAACCTAATTGCAATACCCATTTCGAAAATGTCTATGGAATGCCTTTATTTCAATATATGGAGGGAAACACAGAGCTGAATAACATCTTTTTCAAAGCAATGACTCACGCTGGCCCACTAGGACTTGCAGGGGTACTCAAATTTTATAAAGGGTTTGAGGGAATATCAACACTGGTTGATGTAGGAGGTGGAGCAGGAGATAACTTAAAACAGATTTTTGTATGTCATAATTGGTCAGATGAAGATTGTATAAAGTTTTTAAGAAATTGTCACAAAGCTTTGCCACAACATGGAAAAGTGATTGTTATGGACTATATAGTTCCAGAGGTCCCAAATTCAAGCGACAAATCTAAGCATACTTGTATTATTGACAGTCTCATGTTTTTAGCACATGGTGGAAAGGAAAGAACTGAGAATGAATTTGAAAACTTGTGCAAGAGTTCTGGTTTTTCCAAGTTTCATGTTGCATGCAGCGGGATCTCAGCTACGGTGGGAGTGGTGGAATTCTATAAGTAG	1827	0.3848	MGSISKEIKVPTEVDDPYLSAVLLCFSRVLPSILNAAIDLXQTSSASTFSASQIASLLPNQHPHLPIRLERILPVLASYSLLNCSIRTYDDGKRERVYALSPIGAYFAFDNEGTSLAPLSTLDAKDAILEPNCNTHFENVYGMPLFQYMERNTELNNIFFKAMAHAGPIELERVLKLYKGFEGVSTLVDVGGGVGENLKQIVSAYPSIKGINFDLPQMIQDAPPHPGIEHIGGDMFISVPKGDAIFLKFVCHNWPDEDCIKFLRNCHKALPQHGKVIVLEYIIPEVPNSSDISKHTCIVDNLMFLAHGGKERTENEFKNLCKNSVRMGSISKEIKVPREVDDPYLSAALLCFSRVMPAILNAAIDLNLFDIIAKTQTSSASTFSASQIASLLPNQHPHLPIRLERILPVLASYSLLNCSIRTYDDGKRERDVKNAILEPNCNTHFENVYGMPLFQYMEGNTELNNIFFKAMTHAGPLGLAGVLKFYKGFEGISTLVDVGGGAGDNLKQIFVCHNWSDEDCIKFLRNCHKALPQHGKVIVMDYIVPEVPNSSDKSKHTCIIDSLMFLAHGGKERTENEFENLCKSSGFSKFHVACSGISATVGVVEFYK	608

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8216g00001	608	CDD	AdoMet_MTases	186	278	-	-
	Mupr8216g00001	608	Gene3D	-	328	430	IPR036388	-
	Mupr8216g00001	608	PANTHER	O-METHYLTRANSFERASE	510	596	IPR016461	GO:0008168
	Mupr8216g00001	608	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	510	608	IPR016461	GO:0008168
	Mupr8216g00001	608	Gene3D	-	29	174	IPR036388	-
	Mupr8216g00001	608	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	123	323	IPR029063	-
	Mupr8216g00001	608	SUPERFAMILY	"Winged helix" DNA-binding domain	13	108	IPR036390	-
	Mupr8216g00001	608	Gene3D	Vaccinia Virus protein VP39	510	608	IPR029063	-
	Mupr8216g00001	608	Pfam	Dimerisation domain	359	411	IPR012967	GO:0046983
	Mupr8216g00001	608	SUPERFAMILY	"Winged helix" DNA-binding domain	339	430	IPR036390	-
	Mupr8216g00001	608	FunFam	Caffeic acid 3-O-methyltransferase	3	107	-	-
	Mupr8216g00001	608	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	431	594	IPR029063	-
	Mupr8216g00001	608	Pfam	O-methyltransferase domain	431	509	IPR001077	GO:0008171
	Mupr8216g00001	608	Pfam	O-methyltransferase domain	511	588	IPR001077	GO:0008171
	Mupr8216g00001	608	Pfam	O-methyltransferase domain	125	323	IPR001077	GO:0008171
	Mupr8216g00001	608	Gene3D	Vaccinia Virus protein VP39	431	509	IPR029063	-
	Mupr8216g00001	608	Gene3D	Vaccinia Virus protein VP39	156	324	IPR029063	-
	Mupr8216g00001	608	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	22	345	IPR016461	GO:0008168
	Mupr8216g00001	608	FunFam	Caffeic acid 3-O-methyltransferase	328	436	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8216g00001	Mupr-Chr8216	1908	13623	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8216g00001	327	608	Monolignol Biosynthesis Gene Families	AT5G54160	32.973	4.62e-53	184

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr8216g00001	-		-	gmx:106794104	490.345