Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr819g00002 ATGGAAACTGAAGAACTCTTTCAACTTCCTCATCAATCTCACGGATCCCCGGTTCAAGGCATGGAACGAGTGGTGGCAACGGTTAGCGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCACATGCCGGCGCCAATTACGTTGGCGCGATGTCGAAATCGATAACGCATCTGGAAAACAAATGTGAGGGTGGATTTAAACATAAGAAGAGGGTGTGTTGGAATTTTGAAGGAAAGAAATATGATATTGCGCTGAAGTTTAGAATATTTGTAGTTAACCACCGATGGATTGAAGACTGCATTAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACACGAAGTTGGGCCATTGTTACTGGAAGTTCCCCTCATTGTTCGAGCCAGTAGCTTGAGAAAGAATAAACAGGTCAGTGACAAGTTACATGATACTGGGTCTGAAAAGCAAAAAACCAACTTCAGTTCTGGAGCTTCCGGAACATATGTTTTGGAAGGTTCTTGTTTAATGAAAAAGGAATGCTTGTTAATATTTTTTTCTCTGTATTTCCCATTTTTTAAGCATGAGGAGTCAAGTTCATATTCCTCTAGACTGTCAAGGAAAGGAAAAAGGAATATTTGCAATGGTAATGGAGTCAGTACTGTGGCTGGACCTTCCCGTAAAGGAAGAAGAGTTTCAAGAAATCTTGTTGATGAAGTGGTGTTGGATCCTTCAATTTTGGATTTAAGCCCAGATGACCGCCTTTTTACAATGGATAGACTACAAACTGATGCTGCAGCTACCTCTCACCTTTCTGGTGGTGTCAACAATAACGTTCTTCTAGAAAATATTGAAGGACCTAGTCCTGAATTAAGTAATCAAAGTAGAACAATCAATGGAGGTTCAGATGATATTGAACAGATCAAAGATTCAAATTATATATCTACTCCTAGAAATTCAACCTTGTTTATAGAAGATCCCCTACCTATGCCACAAACATCAATAGATTTATGTTCCAGTGATGATGAAAAATTCACAGTTGGTGATCAGGCTGATAATGTTGCTGGCTTACCTACTTCAAAAGAGTTGTCATGTGTTATATGTTTCACAGATTTCAGCTCAACACGGGGGATTCTGCCGTGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTCGATCATAGGACTTCATTGGGAAAAACATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGATGATCAAGAAAGTTGAGCATGCAGTCACCACTGATCAAAAGATATACTCCCAGACAATCCCATCTGACGATTCAGCCTCAGATATTTTTATCCCCATGGGTCAAGAATTACCGGATAACATCTTTGAGTCCTCACGGGCTGGCGCTTGTGTAGTTTGCCGTGGTCGGGAACCTGAGGATCTTCTTGAGAGTTGCGATGTTTGCCGTACTCGAAAGATCCATTCGTATTGCATGGACCCTCCTCTACGGCCATGGACATGCAGTCACTGCAAGGAACTTAGGATGCTTTATCGTAGTAATCACTCATATTAG 1554 0.4163 METEELFQLPHQSHGSPVQGMERVVATVSGYHGSERFNLIKLISHAGANYVGAMSKSITHLENKCEGGFKHKKRVCWNFEGKKYDIALKFRIFVVNHRWIEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPLIVRASSLRKNKQVSDKLHDTGSEKQKTNFSSGASGTYVLEGSCLMKKECLLIFFSLYFPFFKHEESSSYSSRLSRKGKRNICNGNGVSTVAGPSRKGRRVSRNLVDEVVLDPSILDLSPDDRLFTMDRLQTDAAATSHLSGGVNNNVLLENIEGPSPELSNQSRTINGGSDDIEQIKDSNYISTPRNSTLFIEDPLPMPQTSIDLCSSDDEKFTVGDQADNVAGLPTSKELSCVICFTDFSSTRGILPCGHRFCFPCIQSWVDHRTSLGKTSTCPLCKASFVMIKKVEHAVTTDQKIYSQTIPSDDSASDIFIPMGQELPDNIFESSRAGACVVCRGREPEDLLESCDVCRTRKIHSYCMDPPLRPWTCSHCKELRMLYRSNHSY 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr819g00002 517 ProSiteProfiles Zinc finger RING-type profile. 365 410 IPR001841 -
Mupr819g00002 517 SUPERFAMILY FYVE/PHD zinc finger 462 507 IPR011011 -
Mupr819g00002 517 SMART BRCT_7 18 107 IPR001357 -
Mupr819g00002 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 453 516 IPR013083 -
Mupr819g00002 517 Pfam Zinc finger, C3HC4 type (RING finger) 365 409 IPR018957 GO:0046872
Mupr819g00002 517 SUPERFAMILY RING/U-box 359 417 - -
Mupr819g00002 517 SMART ring_2 365 409 IPR001841 -
Mupr819g00002 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 441 IPR013083 -
Mupr819g00002 517 Pfam twin BRCT domain 75 99 IPR001357 -
Mupr819g00002 517 Pfam twin BRCT domain 24 61 IPR001357 -
Mupr819g00002 517 ProSiteProfiles BRCT domain profile. 13 117 IPR001357 -
Mupr819g00002 517 SUPERFAMILY BRCT domain 17 118 IPR036420 -
Mupr819g00002 517 ProSitePatterns Zinc finger RING-type signature. 381 390 IPR017907 -
Mupr819g00002 517 PANTHER F5A8.9 PROTEIN 195 514 - -
Mupr819g00002 517 Gene3D BRCT domain 18 116 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr819g00002 Mupr-Chr819 4725 10009 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr819g00002 75 123 Core DNA Replication Machinery Family AT4G02110 48.000 4.23e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr819g00002 - - gmx:100815034 788.489