Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8197g00001 ATGTCAATCCATTATTCCCCGCCACCGCCGGCCACCGTCGACTTCATCCGCCGCTCCCTCTCCGACATCTGCTCTCCGCCGACGGAGCACCGTCCCTTCGACACCCCCCGGCGCTTCGCCGCCTTCGCTCAGCGCCTCTTCCACCTCCTCCTCCTGCCGCTTCCGCAGTCTCCGCCCGTCAACACCGCCCTCAAGGGGCTCTCCGGCGAGCTCTCCAAGGCCGTCGAAACCGTCTCCGTCTACAACAATGGCAGCAAGATATTTGTCCTCATAAACTGCAAAACGCTCTGTTCCGCCCTCCAAGAACGCGCCGTCGCCATCGCCGCCTGGCTCGCCCTCCTCGCTTCCGCCCTCCCCGCCGCCGGCGACGACGACCTCCGCAAGCAGGTCTCTGATCTCTCCAGGGACATGAAGCTCGCACAGTTCAGAGTCACAGAGAATGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGGGAAGGGAGAGAGAGCAGCAAAGCGGTGCAGAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGATTTGACACTGGTGATCGTGCTGAGTTTTGTAACCAAGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTGTCCGAGAGAAGGGTATTGGTGTCCTTGGAGAGGATTCTTAGTAACTGGTCTGTGAAGCCTGTCACTCTGACCCCCAATTGGGACTTTGAAATTGTTGAAGATGCTGCTGCCCCTGTTTTTCCATTTAAGAGTTTCCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCAGGAGTCCTCTCAGGCCTATGAGAGGACTGCTATTGAGTACTGGTTTGAACGGTGCATCCAGGATGGGCGTGACCCCACTTGTCCGGTCACCGGCATGGTTCTTAAGTCCTTGGAGCTGAAGCCCAACATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTGTTGAGTATCAAATCAAATCTGCAGTGCAGTATCTAAGTGAGGAACCTTTGTGTGTTGATCATGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCACTAGAAGATACATAATCAGGAATGCTGGTGTTGTGCTGTTGATAGTCACTGTGCTCAGTAATAACTCCAAAACTATTGGATCGCGTTTGAGAAGCAAAGCTCTATTGACTTTACTTAGCATGGCCAAGGATGAAGAAAGCAGGAAAATAATGCTTGAACGGGGTATCACTAGATTGGCCGTACACAGTCTTATTGGGAGCTCTGAGAACGAGAGAGAATATGCTGTCAAGTTATTACTAGAGTTCTGCAATGATGAAGATTGTTGCGTAAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCAAGTATAGCAGGAAATTTGGAGTATCCATCTTTGTCCAATATAGCTGAGGAAGTCTTAAGGCAGATTGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGAACCATTGATTTCACGGTTACATGATGGTTCTGATGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGTTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTATTTGTCGAACTTCTGTCTAATCAAGAAGGAAGGGGACCAAGTCTGCAAGCATTGTATAACTTGTCAGGATTGGATGGCAATGCAACCATCCTTATTGAGTCCTCAGTCCTTCCATCTCTTATAGAAGTTTTATTTGATGAGCAGGATCCATCATATGAGCTTAAGTCATTAGCTGCTTCAACAATTGCGAATATTGTATCTCAACCAGGACATTGGGAATTAGCATCTGCTGACAAGAATGGAAACCCAATGCAGTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTAAACTGTTTGTCCTCTCAATGTCAAGTGACAGTTCTTCGCATTCTTTGTGGTATTACATCTTCTCCTCAGGCATCAGAGTTGGTAGCAAGTCATATCATGTCCGAGGGTGGCTTTAGAACGGTCATACCATTTCTTGAACATCCAGAAGTTGAACACAGAGTATTTGCTTTTAAGCTTACAAGACTACTATCCGAATGGTTTAGTCAAAACATTGCAAATGAGTTGAGGCTTTCAAACAAACTAACGATACTCAAAGAAAAACTGTTAAATAATCAATCCACAAATGATGAGAGATCAGATGCAGCACAGATACTAGCCAATCTTTCCCTCTCAGAAAGTGAAGTAGAGACACTTTTAGGAGGTGATTTTGTGGAGTGGACCACGGTTACTCTCAAGAACCAGAGGCGAGTTTCCAATGCACGGTTTTCTCATACAGCATCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGGAACCTTGATCAACAAACTCTTAATATAGTTAGAGAAAATCGCCTTATGGCTGTTTTCTGTGAGCAGCTGGATTATACTTCAAAACCAAAGGTAAAACGACTCGCTGCCATTGGATTGAAAAACTTATCAGAATTTGGAAGATCAGTTACTGCCAGTGACTCTGAACCATCATCTTCCAGCAGGTTCTGCTCTCCCCTCATGCTCGTATGCAGGAGAGCCGCTAGTCAGCCTTCCACGTGCCCCATTCACAACAGCCGGTGCAACGAAGATAGTCAGCTGTGCCTGCTCAAGAGCAACTGCATCAAACCCCTGGTTGATATCCTCCATGACAATGACACTGATGTTCAGCTTGCTGCAGTGGATGCACTGTCTACTCTAGTACTAGATTACACAGCTCGCAGTTTCAAGAGAGTTGTGGATGAGCTTGAGCAACTGGGTGTGGTTGATTCTCTTATCACTCTTTTCACTGAGGTTAGATCTGAGGAGCTTCAGGAAAAGACTATTTGGATAATAGAAAAGATGTTGAGAGTGGAAAGTATCAGCAATAGGCATGCACTAAATCAGTCTCTTGTGAGAGGTTTGGTTGAAGCCTTTAAGCACGGGAACACCAACACAAGGAAACATTCTCAAGATGCTTTGACCCTTCTAAAGCAGTTATCAGGAGTTAGTGGGAAGTCATCAAGTCAAACTCGAGCTAAGAAATAG 3114 0.465 MSIHYSPPPPATVDFIRRSLSDICSPPTEHRPFDTPRRFAAFAQRLFHLLLLPLPQSPPVNTALKGLSGELSKAVETVSVYNNGSKIFVLINCKTLCSALQERAVAIAAWLALLASALPAAGDDDLRKQVSDLSRDMKLAQFRVTENEERVWCTLEKEGEGRESSKAVQSGIVMDLARALGFDTGDRAEFCNQVKLFKGDPFRSHSVSERRVLVSLERILSNWSVKPVTLTPNWDFEIVEDAAAPVFPFKSFLCPLTKEVMRDPVVVQESSQAYERTAIEYWFERCIQDGRDPTCPVTGMVLKSLELKPNIGLAGAIEEWVGRVVEYQIKSAVQYLSEEPLCVDHVERALDHVYKVSEEHPTRRYIIRNAGVVLLIVTVLSNNSKTIGSRLRSKALLTLLSMAKDEESRKIMLERGITRLAVHSLIGSSENEREYAVKLLLEFCNDEDCCVRIASEKGALVLLSSIAGNLEYPSLSNIAEEVLRQIERVEDNVQCLAAAGRFEPLISRLHDGSDGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSNQEGRGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFDEQDPSYELKSLAASTIANIVSQPGHWELASADKNGNPMQSEIIVLRLLGLLNCLSSQCQVTVLRILCGITSSPQASELVASHIMSEGGFRTVIPFLEHPEVEHRVFAFKLTRLLSEWFSQNIANELRLSNKLTILKEKLLNNQSTNDERSDAAQILANLSLSESEVETLLGGDFVEWTTVTLKNQRRVSNARFSHTASGMQEGLIGLLLHFTRNLDQQTLNIVRENRLMAVFCEQLDYTSKPKVKRLAAIGLKNLSEFGRSVTASDSEPSSSSRFCSPLMLVCRRAASQPSTCPIHNSRCNEDSQLCLLKSNCIKPLVDILHDNDTDVQLAAVDALSTLVLDYTARSFKRVVDELEQLGVVDSLITLFTEVRSEELQEKTIWIIEKMLRVESISNRHALNQSLVRGLVEAFKHGNTNTRKHSQDALTLLKQLSGVSGKSSSQTRAKK 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8197g00001 1037 CDD RING-Ubox_PUB 252 307 IPR045210 -
Mupr8197g00001 1037 SMART arm_5 806 847 IPR000225 GO:0005515
Mupr8197g00001 1037 SMART arm_5 530 567 IPR000225 GO:0005515
Mupr8197g00001 1037 SMART arm_5 360 404 IPR000225 GO:0005515
Mupr8197g00001 1037 SMART arm_5 891 931 IPR000225 GO:0005515
Mupr8197g00001 1037 SMART arm_5 568 611 IPR000225 GO:0005515
Mupr8197g00001 1037 SMART arm_5 938 979 IPR000225 GO:0005515
Mupr8197g00001 1037 ProSiteProfiles U-box domain profile. 247 327 IPR003613 GO:0004842|GO:0016567
Mupr8197g00001 1037 Coils Coil 479 499 - -
Mupr8197g00001 1037 SMART Ubox_2 251 320 IPR003613 GO:0004842|GO:0016567
Mupr8197g00001 1037 SUPERFAMILY ARM repeat 343 757 IPR016024 -
Mupr8197g00001 1037 Pfam U-box domain 252 321 IPR003613 GO:0004842|GO:0016567
Mupr8197g00001 1037 Gene3D - 884 1036 IPR011989 -
Mupr8197g00001 1037 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 323 IPR013083 -
Mupr8197g00001 1037 SUPERFAMILY ARM repeat 797 1020 IPR016024 -
Mupr8197g00001 1037 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 56 1027 - -
Mupr8197g00001 1037 SUPERFAMILY RING/U-box 250 321 - -
Mupr8197g00001 1037 Gene3D - 324 849 IPR011989 -
Mupr8197g00001 1037 Pfam Armadillo/beta-catenin-like repeat 896 929 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8197g00001 Mupr-Chr8197 14145 20543 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8197g00001 249 1026 U-box Gene Family AT1G20780 28.931 1.79e-83 286