Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8195g00004 ATCGATTGGGTCATACGAGTTCAACCTGGTGAACCTGAGCAGACTATAAAAGGTGGTCGCGAGATTCGCAGAAACCCTAGCGATCGATCGAGCTTGGCAGCAATGGCGGACGTTGAAAAAGAGGTGGGTCAGCCAAAGAAGAGGACTTTTAAGAAGTTCAGTTTCCGAGGCGTCGATCTCGATGCTCTATTAGACATGTCCACCGAAGAACTCGTCAAGTTATTCTCTTCACGCGCCCGCAGAAGATTTCAGCGCGGTTTGACCCGCAAGCCTATGGCACTAATCAAGAAGCTCCGTAAGGCTAAACGGGAGGCTCCGGCCGGTGAGAAGCCAGAGCCGGTGAGGACTCACCTCCGCAACATGATAATTGTGCCGGAGATGATTGGGAGCATTATTGGTGTTTACAACGGAAAGACCTTCAATCAAGTTGAAATTAAACCGGAAATGATTGGCCATTACCTTGCCGAGTTCTCGATCTCCTACAAGCCTGTTAAGCATGGAAGGCCTGGTATAGGTGCTACACACTCCTCTAGGTTTATTCCCCTCAAATGA 552 0.4946 IDWVIRVQPGEPEQTIKGGREIRRNPSDRSSLAAMADVEKEVGQPKKRTFKKFSFRGVDLDALLDMSTEELVKLFSSRARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8195g00004 183 Pfam Ribosomal protein S19 81 166 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 ProSitePatterns Ribosomal protein S19 signature. 136 160 IPR020934 GO:0003723
Mupr8195g00004 183 Hamap 30S ribosomal protein S19 [rpsS]. 79 172 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 Gene3D 30s Ribosomal Protein S19; Chain A 39 183 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 SUPERFAMILY Ribosomal protein S19 86 167 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 PRINTS Ribosomal protein S19 family signature 148 163 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 PRINTS Ribosomal protein S19 family signature 116 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 PRINTS Ribosomal protein S19 family signature 136 148 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 43 183 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr8195g00004 183 FunFam 40S ribosomal protein S15 39 183 - -
Mupr8195g00004 183 NCBIfam 30S ribosomal protein S19 50 183 IPR005713 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8195g00004 Mupr-Chr8195 28535 29334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8195g00004 35 183 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.000 9.57e-92 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8195g00004 K02958 - gmx:100801408 282.722