Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8176g00002 ATGGCTGCCACAGCTTCTGCAGGCATAGCCTCCTTGTTTTCTTCTTCCATCAACACTGTCAAATGTCTTCGTTCCAAGAACATAGATCCCCTCGTTGCAACAGTGCCCTCTAACCGCATATTTGCATCTGTGTCACACTCCTATGTAGTGGAACCTTTAACCTTTTCACACAAGTTGTGGGTGCCTAGAATTTCTGCTGCTGTGGCACAAGAAGAGGTTGTTGTCACTGATGAGGTAGTAGATGATGTTGGTTTAGTTGAAGAAGAGAAAGTGGAGGAGAATGAAGGAGAAGTGGTGCCAGCACAAGACTCTGATTCCTCTGCCACCAAGCTTTATTTTGGGAATTTGCCTTATAGTGTTGATAGTGCAAAGCTTGCAGGGTTAATTCAGGATTATGGTAGCGCAGAACTGATTGAGGTTCTTTACGACAGGGATACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGCATTGAAGATTGTAATGCAGTAATAGAGAATCTTGATGGAAAAGAGTTCCTAGGAAGAACCTTGAGAGTGAACTTCTCTAACAAACCAAAACCAAAAGAGCCCTTGTACCCTGAAACTGAATATAAGCTTTTTGTTGGGAACCTGTCATGGTCAGTAACACATGAGAGTTTGACACAAGCCTTTCAAGAATATGGAAATGTGGTTGGAGCTAGGGTCTTATATGATGGAGAAACTGGAAGGTCACGTGGCTATGGCTTTGTTTGCTATTCAACAAAAGCAGAGATGGAATCTGCCATTGCAGCCTTGAATAATGTGGAGCTAGAAGGAAGGGCTATGCGTGTAAGCTTGGCTCAAGGAAAACGTTCAGAAGATTAA 852 0.4284 MAATASAGIASLFSSSINTVKCLRSKNIDPLVATVPSNRIFASVSHSYVVEPLTFSHKLWVPRISAAVAQEEVVVTDEVVDDVGLVEEEKVEENEGEVVPAQDSDSSATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSNKPKPKEPLYPETEYKLFVGNLSWSVTHESLTQAFQEYGNVVGARVLYDGETGRSRGYGFVCYSTKAEMESAIAALNNVELEGRAMRVSLAQGKRSED 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8176g00002 283 FunFam 28 kDa ribonucleoprotein, chloroplastic 191 281 - -
Mupr8176g00002 283 Gene3D - 191 283 IPR012677 -
Mupr8176g00002 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Mupr8176g00002 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 271 IPR000504 GO:0003723
Mupr8176g00002 283 CDD RRM2_NsCP33_like 201 276 - -
Mupr8176g00002 283 FunFam 31 kDa ribonucleoprotein, chloroplastic 69 190 - -
Mupr8176g00002 283 SUPERFAMILY RNA-binding domain, RBD 193 280 IPR035979 GO:0003676
Mupr8176g00002 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Mupr8176g00002 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723
Mupr8176g00002 283 PANTHER OS02G0815200 PROTEIN 54 280 - -
Mupr8176g00002 283 SUPERFAMILY RNA-binding domain, RBD 101 192 IPR035979 GO:0003676
Mupr8176g00002 283 Gene3D - 68 190 IPR012677 -
Mupr8176g00002 283 SMART rrm1_1 201 274 IPR000504 GO:0003723
Mupr8176g00002 283 SMART rrm1_1 110 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8176g00002 Mupr-Chr8176 15629 18212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8176g00002 101 283 Eukaryotic Initiation Factors Gene Family AT3G16380 31.683 6.04e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8176g00002 - - gmx:100820203 424.091