Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8156g00001 ATGGATTTTTATGTTTCTCAACCCTCGCAACTGGAATCTGATGCTCACGCCTACAATCTCGATGACCACTCAAAACCCTCCTTCAATCGTCGCGATTCCTCTTCAGGAAAACTCTTTGTTGGAGGCATTTCCTGGGAGACTTCTCAAGAGTCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACGGATTCAGTGATAATGACAAATAAACTTTCTGGAAGACCACGGGGGTTTGGCTTTGTAACATTTGCCGATTCAGTTGTTGCAGATGAAGTTTTGGCACAGGAACATACCATTGATGGCAGAGTGGTTGAAGTAAAGAGGACAGTCCCCAGGGAGGATATGGAAGTTATTGGAGTATTAAAAACAAAGAAAATATTTGTTGGGGGAATACCCCAGTTTTTCACTGATGATGAGTTGAGGGAATACTTTTCATCTTATGGTGATGTTATTGAGTGCCAAATCATGCTAGATCACAAGACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGACAATGAAGATTCAGTTGATAATGTTTTTGCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAACGATCTGGAGTTGATTACAGCAGCACCTCACGAAAGTCATATGGTGGTTTTGGCAATGGAATGGATGGATATGGCGGAAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATTCTGGAATGAATGGAGCATATAGCCATTTTGAGGGCAGCTTTGGTGGAAGTGCTGCCACTGCTTATGGAGGTTATTGTGGATATGGTTATGGATATGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTATGGAGTCAATTCTTATGGTAATCCTGGGGCTTATGGTAGCACTACTTCCTATGGAGATGGTAATGCATACGGAAGAACTGGTAGTTTCAACCGCACAGGTGGCTATGACAGTGGCAAAGTGGCTGATGAGAAGGATGATGGTCCTACCAATGGAAGGCGGATTTCTAGAAGCGTCGTTTAA 1053 0.4226 MDFYVSQPSQLESDAHAYNLDDHSKPSFNRRDSSSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSVVADEVLAQEHTIDGRVVEVKRTVPREDMEVIGVLKTKKIFVGGIPQFFTDDELREYFSSYGDVIECQIMLDHKTGRSRGFGFVTFDNEDSVDNVFAVGKIHEIGGKQVEIKRAEPKRSGVDYSSTSRKSYGGFGNGMDGYGGNSSRNRNHGKRGGQYTDSGMNGAYSHFEGSFGGSAATAYGGYCGYGYGYGYGGPMYCFGGYGVNSYGNPGAYGSTTSYGDGNAYGRTGSFNRTGGYDSGKVADEKDDGPTNGRRISRSVV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8156g00001 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 112 IPR000504 GO:0003723
Mupr8156g00001 350 FunFam Heterogeneous nuclear ribonucleoprotein 1 35 116 - -
Mupr8156g00001 350 MobiDBLite consensus disorder prediction 328 342 - -
Mupr8156g00001 350 SUPERFAMILY RNA-binding domain, RBD 26 116 IPR035979 GO:0003676
Mupr8156g00001 350 Gene3D - 121 262 IPR012677 -
Mupr8156g00001 350 MobiDBLite consensus disorder prediction 324 350 - -
Mupr8156g00001 350 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Mupr8156g00001 350 SUPERFAMILY RNA-binding domain, RBD 123 231 IPR035979 GO:0003676
Mupr8156g00001 350 CDD RRM1_hnRNPA_hnRNPD_like 38 108 - -
Mupr8156g00001 350 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 22 331 - -
Mupr8156g00001 350 SMART rrm1_1 126 199 IPR000504 GO:0003723
Mupr8156g00001 350 SMART rrm1_1 37 108 IPR000504 GO:0003723
Mupr8156g00001 350 Gene3D - 34 117 IPR012677 -
Mupr8156g00001 350 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 117 252 - -
Mupr8156g00001 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 105 IPR000504 GO:0003723
Mupr8156g00001 350 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 194 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8156g00001 Mupr-Chr8156 3198 7113 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8156g00001 31 200 Eukaryotic Initiation Factors Gene Family AT1G71770 25.532 3.14e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8156g00001 K12741 - gmx:100818080 548.125