Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8138g00003 ATGGCGGAAGAGAGTAAATCTAGCGAGGAGAGTGTGAAGCTGTTCGTAGGGCAAGTGCCGAAGCACATGACCGAAGCGGAACTGCTTGCAATGTTCAAGGAGTTCGCGGTCGTGGATGAGGTCAACATAATCAAGGACAAAGTAACTCGTGCTTCCCGAGGTTGTTGCTTCCTCATTTGTCCCTCAAGGGACGAGGCTGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACTCTACCAGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTTTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTTGAAATATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACGAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTGGAGGCAATCAGTGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACCGAAAAGGAAAGGCAAGCTCGAAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACCGATTCTCAGCATCCGTCATTGTTTGGAGCCGTGCCTATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCACCTGGAGGTTATGGGCTCATGCCGTACCGCTTGCCACCAATGCAGAATCAACATGGTTTCCATAATATGATGCCTCACATGAACCAAGGAAGTGCTTTACGGCCTGATCTTGGCCCCAACATGAACCCTAGAAATTATCATGTGCCACCAGCAACTTACGTTGGCTCTTATCCTGCTGTGCCGGGTCTGCAACATCCTATGGCATATCCCACAGGGATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGTTCTGTTTCACCTGCTGGTGGAAATAACAACTCTGCTGCGTCCTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACTTGGTGCCAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACCGGGTTTGTTAGTTATGATTCTCCAGAGGCTGCTGAATCTGCCATCAGTAGGATGAATGGATGCCAATTAGGAGGCAAGAAGTTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1269 0.4523 MAEESKSSEESVKLFVGQVPKHMTEAELLAMFKEFAVVDEVNIIKDKVTRASRGCCFLICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEISALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAISGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGAVPMGYVPPYNGYGYQAPGGYGLMPYRLPPMQNQHGFHNMMPHMNQGSALRPDLGPNMNPRNYHVPPATYVGSYPAVPGLQHPMAYPTGMISPRPMNTSPGSVSPAGGNNNSAASSGASKNSGGQVEGPLGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGFVSYDSPEAAESAISRMNGCQLGGKKLKVQLKRDNKQGKPY 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8138g00003 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 93 IPR000504 GO:0003723
Mupr8138g00003 422 MobiDBLite consensus disorder prediction 301 336 - -
Mupr8138g00003 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 78 IPR000504 GO:0003723
Mupr8138g00003 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 163 IPR000504 GO:0003723
Mupr8138g00003 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 409 IPR000504 GO:0003723
Mupr8138g00003 422 PRINTS Paraneoplastic encephalomyelitis antigen family signature 105 120 IPR002343 GO:0003723|GO:1990904
Mupr8138g00003 422 PRINTS Paraneoplastic encephalomyelitis antigen family signature 120 132 IPR002343 GO:0003723|GO:1990904
Mupr8138g00003 422 PRINTS Paraneoplastic encephalomyelitis antigen family signature 12 27 IPR002343 GO:0003723|GO:1990904
Mupr8138g00003 422 PRINTS Paraneoplastic encephalomyelitis antigen family signature 161 178 IPR002343 GO:0003723|GO:1990904
Mupr8138g00003 422 PANTHER RNA BINDING PROTEIN 11 415 - -
Mupr8138g00003 422 SUPERFAMILY RNA-binding domain, RBD 100 417 IPR035979 GO:0003676
Mupr8138g00003 422 SMART rrm1_1 101 176 IPR000504 GO:0003723
Mupr8138g00003 422 SMART rrm1_1 13 89 IPR000504 GO:0003723
Mupr8138g00003 422 SMART rrm1_1 344 411 IPR000504 GO:0003723
Mupr8138g00003 422 MobiDBLite consensus disorder prediction 303 334 - -
Mupr8138g00003 422 Gene3D - 1 96 IPR012677 -
Mupr8138g00003 422 CDD RRM1_2_CELF1-6_like 13 89 - -
Mupr8138g00003 422 Gene3D - 313 414 IPR012677 -
Mupr8138g00003 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 415 IPR000504 GO:0003723
Mupr8138g00003 422 FunFam RNA-binding protein BRN1 isoform X1 97 189 - -
Mupr8138g00003 422 SUPERFAMILY RNA-binding domain, RBD 6 94 IPR035979 GO:0003676
Mupr8138g00003 422 CDD RRM3_CELF1-6 345 411 - -
Mupr8138g00003 422 FunFam Sex lethal, isoform D 323 416 - -
Mupr8138g00003 422 MobiDBLite consensus disorder prediction 182 206 - -
Mupr8138g00003 422 FunFam RNA-binding protein BRN1 1 96 - -
Mupr8138g00003 422 Gene3D - 97 189 IPR012677 -
Mupr8138g00003 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Mupr8138g00003 422 MobiDBLite consensus disorder prediction 190 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8138g00003 Mupr-Chr8138 15309 21654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8138g00003 343 417 Eukaryotic Initiation Factors Gene Family AT4G34110 34.940 2.49e-07 51.2