Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8134g00003 ATGAAGCGTGAAAAGTTACCTGCGAGGCTCTTCTTCCTGATAAGGGTTTACCTGCTAACTTATTTGGGAACTTCCAATTCGACTCTCATTCTTCTCACTTCGTCAGCCATGACGGATGGCCATCTCTTCAACAACATCACCCTCGGAGGCCGTGGCGGCACCAATCCAGGGCAGATAAAAATATATTCCGGAGGAATTGTATGGAAGAGACAGGGTGGTGGTAAATTAATTGAAGTTGATAAATCTGACATAATGGGGGTGACATGGATGAAGGTTCCAAGGACTAACCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAGTTTACCGGATTTCGTGACCAGGATGTAGCCAGTTTGACCAATTTTTTCCAAAACACCTGTGGAATAACGGTAGAGGAGAAGCAGCTTTCTGTTAGTGGGCGTAATTGGGGAGAAGTTGACCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCTCAAACACAGCTTCAAGGGAAGAATGATGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCAAATGAGAAAGATTCACTGATGGAGATAAGCTTCCACATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGACGCTGTTGTTACATTTGAGGGTATTGCAATTCTTACACCAAGAGGACGATACAGTGTTGAGTTACACATGTCATTCTTACGGCTTCAGGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTCGTCATTATTAGTCTTGACCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGAATTGGCAATAAATGAAGATCTTTATAACACAAAGTACAAGGACAAGTTGGAGCTGTCTTATAAGGGGCTTATTCATGAAGTGTTCACCACAATATTACGTGGCTTGTCTAGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCCAAACCTCCCACTCTTATTCTTCATGAAGAGATTGATTATGTGGAATTTGAGCGGCATGCTGCTGGTGGTGCCAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGCCCAACCCACTGTTGGTATAAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATTAAAAATGAAGCTGGTGGGGATGAAAGTGATGAGGAGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGCCAGTGATATTGGTGATGAGAAAGAGGCAAAAGCCTGCCAAAAAGGAACCAAAGAAGGACCTGCCTTCTAAGGCATCTACCTCTAAGAAGAAATCAAAAGATGATGAAGATGGAAAAAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTCTCTAAATTGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGATGAGAAGGAGCCATACGAGGCAAAAGCGCGTGAAGATAAAAAACGTTACAAGGATGAGATTAGTGGCTACAAGAATCCCCAACCCATGAATATTGATTCAGGGAATGAATCCGACAGTGCCTAA 2028 0.4142 MKREKLPARLFFLIRVYLLTYLGTSNSTLILLTSSAMTDGHLFNNITLGGRGGTNPGQIKIYSGGIVWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLFYKFTGFRDQDVASLTNFFQNTCGITVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSELAINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSSAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGANMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPTVGIKKVLENDDDDAVDPHLERIKNEAGGDESDEEILLLTRMMKVLLLMILGQMILMPVILVMRKRQKPAKKEPKKDLPSKASTSKKKSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSADEKEPYEAKAREDKKRYKDEISGYKNPQPMNIDSGNESDSA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8134g00003 675 Gene3D - 34 128 IPR011993 -
Mupr8134g00003 675 Pfam Histone chaperone Rttp106-like 386 475 IPR013719 -
Mupr8134g00003 675 CDD HMG-box_AtSSRP1 588 662 - -
Mupr8134g00003 675 FunFam FACT complex subunit SSRP1 37 129 - -
Mupr8134g00003 675 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 591 659 IPR009071 -
Mupr8134g00003 675 FunFam Fact complex subunit ssrp1 235 374 - -
Mupr8134g00003 675 Gene3D - 235 374 - -
Mupr8134g00003 675 Pfam HMG (high mobility group) box 591 659 IPR009071 -
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 410 427 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 277 293 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 452 470 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 392 410 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 255 271 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 300 316 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 365 378 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 PRINTS Structure-specific recognition protein signature 436 452 IPR000969 GO:0003677|GO:0005634
Mupr8134g00003 675 CDD PH1_SSRP1-like 243 376 - -
Mupr8134g00003 675 FunFam FACT complex subunit SSRP1 375 483 - -
Mupr8134g00003 675 CDD PH2_SSRP1-like 378 477 - -
Mupr8134g00003 675 MobiDBLite consensus disorder prediction 629 675 - -
Mupr8134g00003 675 Gene3D High mobility group box domain 574 669 IPR036910 -
Mupr8134g00003 675 PANTHER FACT COMPLEX SUBUNIT SSRP1 37 517 - -
Mupr8134g00003 675 MobiDBLite consensus disorder prediction 629 656 - -
Mupr8134g00003 675 Gene3D - 131 215 IPR038167 -
Mupr8134g00003 675 MobiDBLite consensus disorder prediction 548 597 - -
Mupr8134g00003 675 MobiDBLite consensus disorder prediction 554 582 - -
Mupr8134g00003 675 Pfam POB3-like N-terminal PH domain 43 135 IPR035417 -
Mupr8134g00003 675 SUPERFAMILY PH domain-like 242 476 - -
Mupr8134g00003 675 Gene3D - 375 483 IPR011993 -
Mupr8134g00003 675 Pfam Structure-specific recognition protein (SSRP1) 142 210 IPR024954 -
Mupr8134g00003 675 SUPERFAMILY HMG-box 578 660 IPR036910 -
Mupr8134g00003 675 FunFam FACT complex subunit SSRP1 575 668 - -
Mupr8134g00003 675 FunFam FACT complex subunit SSRP1 132 215 - -
Mupr8134g00003 675 SMART hmgende2 590 660 IPR009071 -
Mupr8134g00003 675 MobiDBLite consensus disorder prediction 661 675 - -
Mupr8134g00003 675 SMART Rtt106_2 384 477 IPR013719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8134g00003 Mupr-Chr8134 27533 33406 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8134g00003 587 659 ARID Transcription Factor Family AT1G04880 42.466 7.09e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mupr8134g00003 POB3_N 5.9e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8134g00003 K09272 - gmx:100805034 1123.23