LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr8127g00001	ATGCTGCTATGCACCAAAGCAAAACCAAGCCTTGTGAACAAGAACATGGCCAGCAAGAGAAAAAGATGCCAAGGTGAAGGAGGGGAAAAGAGCAGTGAAGAAGGGAACATTGAATGGGAGCAGCTAAGGGAAGAGGCAGCATCAATGGCTGCTGCTATACTTGGTGCTAGAATAGCCAAGAAGCGTTACATTGGGGTGCGCCAAAGACCTTCAGGTAGATGGGTAGCTGAAATCAAAGACACCATACAGAACATTAGGCTTTGGTTAGGCACTTATGACACTGCTGAAGATGCTGCTAGAGCTTATGATGAAGCAGCTCGTTTGCTTCGTGGTGCCAACACTCGCACAAACTTCTTTTCTTCCCAATCTTCTCCTTATAGTCCTGCTCTTCCTCCCAAAATAGCCAAACTCCTCCTTCTTAGGCTCAAAGCTAGAAACGTGACCTCTTCATGTATGGACATGGTTACCACTACTTTTCCAAGTAACCACTGTGAGCATGAAACCAAAGTTGAACCTGAACCACAATCCGAACCCGAATCCCATTATGGGAATTTTTTTGATATGGTAGGAAATGTGGTTGTTGAAGAAAGTTATTATGGAGGTGCTAGTTATAGTTCTTCTGCCATGACTACTTGTGACTATAGTTGTGGTACTACTAATGAAGAAAGTTCTAACCAAGAGGGTAGTGGGGGGGATTTCAGATTCGGGTATCATTGTGCTGACAATGTTTTTGGTGAAAACAACCAGATTGTGAGTGGAAAAGGAGAGTTTCAAGACTGTGATGTTGGGATAACTGATTTTCAGTTTTTGAACACTGCTGGAGCACTGAGTTACCCTTTTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGACCCATAGAGGAAGAGAAATATGATGTTGATAATTCACCACTTGGTAGAGAAACTTTCAGGATGAAGTATGAACGTAAACTCTCAGCTTGTCTTTACACCTTAATTGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGAGCAGAAAATGGAAAGGAATTGGAAAATTTTTGA	1044	0.4282	MLLCTKAKPSLVNKNMASKRKRCQGEGGEKSSEEGNIEWEQLREEAASMAAAILGARIAKKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTAEDAARAYDEAARLLRGANTRTNFFSSQSSPYSPALPPKIAKLLLLRLKARNVTSSCMDMVTTTFPSNHCEHETKVEPEPQSEPESHYGNFFDMVGNVVVEESYYGGASYSSSAMTTCDYSCGTTNEESSNQEGSGGDFRFGYHCADNVFGENNQIVSGKGEFQDCDVGITDFQFLNTAGALSYPFSPFEIAEEMVGPIEEEKYDVDNSPLGRETFRMKYERKLSACLYTLIGVSECLRLQVGAENGKELENF	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr8127g00001	347	FunFam	ethylene-responsive transcription factor RAP2-11	61	120	-	-
	Mupr8127g00001	347	SUPERFAMILY	DNA-binding domain	62	119	IPR016177	GO:0003677
	Mupr8127g00001	347	CDD	AP2	61	118	IPR001471	GO:0003700\|GO:0006355
	Mupr8127g00001	347	MobiDBLite	consensus disorder prediction	15	36	-	-
	Mupr8127g00001	347	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	28	210	-	-
	Mupr8127g00001	347	ProSiteProfiles	AP2/ERF domain profile.	62	119	IPR001471	GO:0003700\|GO:0006355
	Mupr8127g00001	347	Gene3D	AP2/ERF domain	61	120	IPR036955	GO:0003700\|GO:0006355
	Mupr8127g00001	347	SMART	rav1_2	62	125	IPR001471	GO:0003700\|GO:0006355
	Mupr8127g00001	347	PRINTS	Ethylene responsive element binding protein signature	63	74	IPR001471	GO:0003700\|GO:0006355
	Mupr8127g00001	347	PRINTS	Ethylene responsive element binding protein signature	85	101	IPR001471	GO:0003700\|GO:0006355
	Mupr8127g00001	347	MobiDBLite	consensus disorder prediction	19	36	-	-
	Mupr8127g00001	347	Pfam	AP2 domain	62	111	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr8127g00001	Mupr-Chr8127	3919	4962	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr8127g00001	60	138	AP2-EREBP Transcription Factor Family	AT5G19790	65.823	1.32e-27	107

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mupr8127g00001		AP2	4.7e-14	CL0081