Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8078g00001 ATGGATCGGGAAGAATATTTGCGGAAGTGTTCTAATATGAAATGCCAGAGAGTTCACGTGGATGAATCATATGTACCTGCTCTTGAAGATGAAGTAATGGAAGTTGAGCGTTTGCTTGCAGAACCTAGAAATGATCATGCTTCCATGGATGGTAGTTTGGATTCTCATACAACTTTGAATTGCAAGGATGATTTGGAACTGGAGGTCCTTGATGGATTGCTGGATGATGTTGAAATCGATGATCTTGAAGGAACTGATGGATTCTCTGGTGCATGTGAAGAATATTTTTTGGATTTTGAATTTGCTGACAAAGTTGAGGAGGTACTACTAGGCTCTGGTCCTTTTGAAGGCCCATTCTTGCAAAACTCATGTTCAGAAAGTCATTCTTCCGGATTAAGCGGAAGTAGCATTGTTGGTGGGGTTTTAGAATCAACAAAAGTTCCTATTGCACAATCTGAATGCAAAAATGATTCTCTAGATGAGACAGTAACCTATGAATCACATGGTGCCTTCAGGAACAGTCCAAGTCAACCATCAAAAGTAAAATGCAGGTACAACATTTCACTTGATGTACAACATCTGCAAGAGTTGGATAACAATCGTCATTTAGCTGGTGGTATATTGACTTGTAAGAAGGAAAAGGGTCCTGTTGAAAAATGCCAACCTGCTGCACTTAGAGAGAAGAGATTCCGAAGGCCTACTCAGAGGTATATTGAAGAATTTTCAAATTCAGGGTCAAAGGAAAAGGTATCTACTGCTGGTACAAAAACTAAACATTTAAGCGACTCGTCATGTAATGTACTTCATATAAGAATTAAATCATTGAAGAGTCCAAGTGAGAAGTCTAGTAATGAAAATAGTGACGCGAAGCTTCCTGAGTTGCAAGTTCGCAAAGGTCGTCTGAAGAAAGAGAAACACGAGTGTGACGAGTCATTTCCGTCGGAGTCTGAGGATGGATGTTCGACATCAAAAAGATCTAGAAGAAAAGATCGAAGAAAGCATCAAAAGATGTGGACTCTCCCTGAAGTGTTGAAGTTGGTTGAAGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATAAAGAGGTTTTTGTTTTCTTCCTCAAGCTACCGAACTCCCATAGATCTGAGGGACAAGTGGCGAAACCTTTTGAGAGCCAGTTCTGCACACAAAAACAAGAGAGAGGTTGAGCAAAATGACGAGCTTGCCCTGCGTCCCTTACCATTTAATGTGGTAGACCGGGTGCGAGAATTGGCTGAAATTCACCCATACCCAAGGCAACGTGGGTCAAAGAAGTTGCGTGTTAGTGAAGCTGGCTTTTCTGTCATTGCTAAAGATTCTCCTCCCGTTAGTTTTAGCAAAAGACATGAAAAA 1377 0.4096 MDREEYLRKCSNMKCQRVHVDESYVPALEDEVMEVERLLAEPRNDHASMDGSLDSHTTLNCKDDLELEVLDGLLDDVEIDDLEGTDGFSGACEEYFLDFEFADKVEEVLLGSGPFEGPFLQNSCSESHSSGLSGSSIVGGVLESTKVPIAQSECKNDSLDETVTYESHGAFRNSPSQPSKVKCRYNISLDVQHLQELDNNRHLAGGILTCKKEKGPVEKCQPAALREKRFRRPTQRYIEEFSNSGSKEKVSTAGTKTKHLSDSSCNVLHIRIKSLKSPSEKSSNENSDAKLPELQVRKGRLKKEKHECDESFPSESEDGCSTSKRSRRKDRRKHQKMWTLPEVLKLVEGISEYGVGRWTDIKRFLFSSSSYRTPIDLRDKWRNLLRASSAHKNKREVEQNDELALRPLPFNVVDRVRELAEIHPYPRQRGSKKLRVSEAGFSVIAKDSPPVSFSKRHEK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8078g00001 459 ProSiteProfiles Myb-like domain profile. 330 385 IPR001005 -
Mupr8078g00001 459 Pfam Myb-like DNA-binding domain 337 385 IPR001005 -
Mupr8078g00001 459 MobiDBLite consensus disorder prediction 238 259 - -
Mupr8078g00001 459 SMART sant 334 387 IPR001005 -
Mupr8078g00001 459 MobiDBLite consensus disorder prediction 276 295 - -
Mupr8078g00001 459 Gene3D - 323 436 - -
Mupr8078g00001 459 SUPERFAMILY Homeodomain-like 337 405 IPR009057 -
Mupr8078g00001 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 329 389 IPR017930 -
Mupr8078g00001 459 CDD SANT_TRF 336 386 - -
Mupr8078g00001 459 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 7 432 - -
Mupr8078g00001 459 MobiDBLite consensus disorder prediction 302 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8078g00001 Mupr-Chr8078 122 10678 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8078g00001 336 385 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 3.02e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mupr8078g00001 Myb_DNA-binding 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8078g00001 - - gmx:100810255 731.095