Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8064g00001 ATGGTGGAGGTTTCGAATTTCAGCGCGGGTGAAGAATTGGAGGCTTTGGAGTGTGTGAATTCGGGGTTTAGCGAGGGTTTGGGAGGGTTATTGGGTGAATGGAAGGGTTCGGGCACGAGAATGGTGATGTCACGCACTGATACGATGACGACGACTTCGGATCTTAATAGAACTGGTCCCGTGGAAAGAGACATTGAGCAGGCTATTACTGCTTTAAAAAAGGGGGCTTACTTGCTCAAGTATGGAAGAAGAGGGAAGCCCAAGTTTTGTCCCTTTAGGCTTTCCAATGACGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGGATTATATCTGGACAACGCACTCCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAATACCAGTCGTTTTCTCTCATTTACAATGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTAATTTCACGCAGCCATCACCGGAAGTGGAGACCAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGGACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGATAGCTTGCAAAAGGACAGTGGGGATCATCTTCGCCTTCATAGCCCATATGAAAGCCCCCCTAAGAATTGTTTGGATAAAGCATTTTCAGATGTGATTTATTATCCTATTCCTCCAATGGGTTTCTACCCTCCAGATTCTGCCAGTGGTTCACTCCACTCTGTCTCATCAGGAGGATCGGATAGTATGCATGGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGTTCATCTAGCCAAGGTTCTGGTCATGATGACGGTGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTACTGGGTGCTGGGGCTCACCAAGTTGGGAGTAAATTTGGTGTCAAAATGGATTCTCTTTTGCCCAAAGCCTTGGAATCGGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGGAAACATGCAGCCTTGGTGACCAAACAAGGTGAAATTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCTGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATCGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGACATGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGCCCTTTGGAGGGCATACATGTGTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTTCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAGGGTCTTCGTACAGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAATTTGTTCCAACCTGTGTTGTGGCTCTTGTTGAACCTAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTTGCACTTTCTAGATCAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACCCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACATGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACTCCCCAACATTAGTAGAAGCACTGAAAGACAAACAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACTGCAGCCATATGTCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGCTGCCGTGTGCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGTTTATTGTCATTCATGCAGTAGTAAGAAATCTGTTAAGGCTTCAATGGCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACCGATTCTTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTGTCAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAACAAAAAATTGGAATTCAATAGTAGCCGTGTCTCGCCTGTTCCAAATGGAGGTTCACAATGGGGAGCAATGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCGACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACGCCAACCCCAACACTTGGGGGACTTGCATCCCCAAGGATAGTTGTGGATGATGCTAAGAGAACCAATGATAGCCTCAGTCAGGAGGTTATAAAATTAAGATCTCAGGTGGAAAACCTGACTCGGAAAGCCCAGCTTCAAGAAGTAGAGTTGGAAAGAACAACTAAACAGTTAAAAGAGGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGCTGCCTGTAGGAGCATCTAGGAATGTCAGGTCACCACCCTCTCTTGCTTCCTGTGGCTCAAATCCTGTTTCCAATGACCTTACCAATGCTTCCTTTGATCGATTGAACATTCAAGCAACAAGCCCAGAATCAGATTCAACTGGATCCAATAACCAGTTACTTTCAAATGGATCAAGCACCAACACCAACCGGAGTGCAGGTCACATTAAACACAGTCAATCGGATGCAACTAGCAGAAATGGGAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTCCCTGGAGGTGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGTTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCAAGAGTATATGAACAGTACAACGTGCGCATGATTGACAAGTCAACCATTGGTGTTGGGAGTGAGGACCTGGCTCATTGA 3450 0.4362 MVEVSNFSAGEELEALECVNSGFSEGLGGLLGEWKGSGTRMVMSRTDTMTTTSDLNRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRPESRSDGIPSEANSPRTYTRRSSPLNSPFGSNDSLQKDSGDHLRLHSPYESPPKNCLDKAFSDVIYYPIPPMGFYPPDSASGSLHSVSSGGSDSMHGQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGAGAHQVGSKFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKFVPTCVVALVEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTNDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVYCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQSSMSRRGSVNQGSLEFIGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPVPNGGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLASPRIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGASRNVRSPPSLASCGSNPVSNDLTNASFDRLNIQATSPESDSTGSNNQLLSNGSSTNTNRSAGHIKHSQSDATSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTIGVGSEDLAH 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8064g00001 1149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 715 774 IPR013083 -
Mupr8064g00001 1149 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 360 370 IPR000408 -
Mupr8064g00001 1149 Gene3D - 64 180 IPR011993 -
Mupr8064g00001 1149 Pfam Unstructured region between BRX_N and BRX domain 1004 1073 - -
Mupr8064g00001 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 879 908 - -
Mupr8064g00001 1149 CDD PH_PLC_plant-like 63 173 - -
Mupr8064g00001 1149 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 519 529 IPR000408 -
Mupr8064g00001 1149 Gene3D - 261 435 IPR009091 -
Mupr8064g00001 1149 Gene3D - 436 540 IPR009091 -
Mupr8064g00001 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 649 700 IPR000408 -
Mupr8064g00001 1149 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 108 987 - -
Mupr8064g00001 1149 SMART fyve_4 699 768 IPR000306 GO:0046872
Mupr8064g00001 1149 Pfam FYVE zinc finger 701 767 IPR000306 GO:0046872
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 770 848 - -
Mupr8064g00001 1149 SUPERFAMILY FYVE/PHD zinc finger 701 772 IPR011011 -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 834 848 - -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 1026 1080 - -
Mupr8064g00001 1149 FunFam PH, RCC1 and FYVE domains-containing protein 1 535 706 - -
Mupr8064g00001 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 312 373 IPR000408 -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 770 788 - -
Mupr8064g00001 1149 FunFam Putative E3 ubiquitin-protein ligase HERC1 707 775 - -
Mupr8064g00001 1149 CDD FYVE_like_SF 710 763 - -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 990 1010 - -
Mupr8064g00001 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 481 532 IPR000408 -
Mupr8064g00001 1149 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 705 767 IPR017455 -
Mupr8064g00001 1149 Gene3D - 541 714 IPR009091 -
Mupr8064g00001 1149 PRINTS Chromosome condensation regulator RCC1 signature 426 442 IPR000408 -
Mupr8064g00001 1149 PRINTS Chromosome condensation regulator RCC1 signature 586 604 IPR000408 -
Mupr8064g00001 1149 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Mupr8064g00001 1149 PRINTS Chromosome condensation regulator RCC1 signature 483 497 IPR000408 -
Mupr8064g00001 1149 PRINTS Chromosome condensation regulator RCC1 signature 357 370 IPR000408 -
Mupr8064g00001 1149 PRINTS Chromosome condensation regulator RCC1 signature 467 483 IPR000408 -
Mupr8064g00001 1149 PRINTS Chromosome condensation regulator RCC1 signature 644 665 IPR000408 -
Mupr8064g00001 1149 SUPERFAMILY RCC1/BLIP-II 311 702 IPR009091 -
Mupr8064g00001 1149 Pfam Pleckstrin homology domain 66 172 IPR001849 -
Mupr8064g00001 1149 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 467 477 IPR000408 -
Mupr8064g00001 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 374 425 IPR000408 -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 1026 1067 - -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 179 231 - -
Mupr8064g00001 1149 SUPERFAMILY PH domain-like 64 172 - -
Mupr8064g00001 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Mupr8064g00001 1149 FunFam PH, RCC1 and FYVE domains-containing protein 1 283 534 - -
Mupr8064g00001 1149 Coils Coil 911 987 - -
Mupr8064g00001 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 480 529 IPR000408 -
Mupr8064g00001 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 374 422 IPR000408 -
Mupr8064g00001 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 425 477 IPR000408 -
Mupr8064g00001 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 544 593 IPR000408 -
Mupr8064g00001 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 650 697 IPR000408 -
Mupr8064g00001 1149 Pfam Regulator of chromosome condensation (RCC1) repeat 596 645 IPR000408 -
Mupr8064g00001 1149 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 426 480 IPR000408 -
Mupr8064g00001 1149 Pfam Transcription factor BRX N-terminal domain 962 994 IPR027988 -
Mupr8064g00001 1149 Pfam Transcription factor regulating root and shoot growth via Pin3 1075 1130 IPR013591 -
Mupr8064g00001 1149 MobiDBLite consensus disorder prediction 188 217 - -
Mupr8064g00001 1149 ProSiteProfiles BRX domain profile. 1076 1131 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8064g00001 Mupr-Chr8064 1461 15818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8064g00001 971 1140 Major Intrinsic Protein MIP AT1G31880 36.464 3.96e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8064g00001 - - gmx:100791947 2036.15