Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8028g00004 ATGAAAAGGAGTTCTGAAGTTCATTCTCTTTCTGAATTCTGCACTTTGATCATCGTCAATTTCAGCGAGGATGTCCCATCAAGGCGAATCATCGGACCCCGCAGGAAATCGGGGAAGAAGGACTTCTCGACCGCGATTCTGGAACGGAAAAAGTCGCCGAACCGGCTTGTTGTTGACGAGGCCGTCAACGACGACAACTCCGTCGTCACCATGAACCCCCACACCATGGAAGTGCTTCAGCTTTTCCGAGGGGATACTATCCTCATCAAGGGTAAGAAACGGAGGGATACAATTTGTATAGCTCTTGCTGATGATAACTGTGAGGAGCCCAAGATCAGGATGAACAAAGTTGTGAGGTCGAATTTGAGGGTTCGGCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCGGATGTCAAGTATGGGAAACGTGTGCACATTCTGCCCATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCTTATTTCTTGGAGGCCTATCGTCCTGTCAGAAAAGGTGATCTATTTCTTGTCCGGGGTGGGATGAGAAGTGTAGAGTTCAAGGTCATTGAAACAGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAAATTTTCTGTGAGGGGGAGCCTTTGAAAAGAGAGGATGAAGAAAGGCTGGATGAAGTTGGGTATGATGACGTGGGTGGTGTCAGGAAACAAATGGCTCAGATTCGTGAGTTGGTTGAGCTTCCATTGAGGCATCCACAGCTTTTCAAATCAATTGGTGTGAAACCTCCCAAAGGAATTTTACTTTACGGACCCCCAGGTTCTGGGAAGACATTAATAGCAAGAGCTGTAGCTAATGAAACTGGAGCTTTCTTCTTTTGTATTAATGGACCAGAGATTATGTCCAAACTGGCTGGAGAGAGTGAAAGCAACCTCAGGAAAGCATTTGAAGAGGCTGAAAAGAATGCACCGTCCATTATCTTTATTGATGAAATTGATTCCATTGCACCCAAGCGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGTGCTCATGTAATTGTTATTGGAGCTACTAATCGGCCAAATAGCATTGACCCAGCACTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAGTTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTGGAGAGGATTGCAAAAGATACTCATGGGTATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGGGAAAAGATGGATGTCATTGACTTGGAGGATGAGACTATTGATGCTGAAGTATTGAATTCCATGGCAGTTACAAATGAGCATTTCCAGACTGCACTTGGAACAAGCAATCCATCAGCTTTACGTGAAACTGTTGTTGAAGTGCCTAATGTCAGCTGGGAAGACATTGGAGGCCTTGAGAATGTCAAGCGGGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCACCATCAAAAGGAGTTCTCTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGTCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCTAATGTTAGAGAAATTTTTGACAAGGCTAGACAATCGGCTCCATGTGTCCTCTTCTTTGATGAGCTTGATTCTATTGCCACTCAGAGAGGAAGCAGTGTTGGTGATGCTGGTGGTGCTGCTGATAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCTGACATCATTGACTCCGCACTTCTTCGGCCAGGCCGTCTTGATCAATTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATCAAATCTTCAAGGCTTGCTTGAGGAAGTCACCTATCTCAAAAGATGTTGATTTGAGAGCATTGGCTAGGTATACTCAAGGGTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGAGCATGCAAATATGCCATAAGAGAAAACATAGAAAAGGATATAGAGAGAGAGAGGAAGAGGAGGGAAAACCCTGAGGCCATGGATGAAGACAGCGTGGACGACGAAGTTGCAGAGATCAAGGCTGCTCATTTTGAGGAGTCAATGAAATATGCACGTAGGAGTGTTAGTGATGCTGATATACGCAAATACCAGGCATTTGCTCAGACCTTACAGCAATCAAGAGGGTTTGGAAGTGAATTTAGGTTTACAGAGACTGGAAATAGGACTACTGGATCTGACCCCTTTGCAACTTCTGCTGCTGGGGCTGATGAAGATGATCTTTATAGTTAG 2496 0.4427 MKRSSEVHSLSEFCTLIIVNFSEDVPSRRIIGPRRKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMNPHTMEVLQLFRGDTILIKGKKRRDTICIALADDNCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERKRRENPEAMDEDSVDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFTETGNRTTGSDPFATSAAGADEDDLYS 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8028g00004 831 Pfam ATPase family associated with various cellular activities (AAA) 270 399 IPR003959 GO:0005524|GO:0016887
Mupr8028g00004 831 Pfam ATPase family associated with various cellular activities (AAA) 543 676 IPR003959 GO:0005524|GO:0016887
Mupr8028g00004 831 FunFam Cell division control 48 401 492 - -
Mupr8028g00004 831 CDD RecA-like_CDC48_r1-like 234 399 - -
Mupr8028g00004 831 FunFam Transitional endoplasmic reticulum ATPase 33 137 - -
Mupr8028g00004 831 Pfam Cell division protein 48 (CDC48), domain 2 157 218 IPR004201 -
Mupr8028g00004 831 NCBIfam CDC48 family AAA ATPase 56 793 IPR005938 GO:0016787
Mupr8028g00004 831 FunFam Transitional endoplasmic reticulum ATPase 493 676 - -
Mupr8028g00004 831 FunFam Cell division control 48 138 234 - -
Mupr8028g00004 831 SMART AAA_5 539 678 IPR003593 GO:0016887
Mupr8028g00004 831 SMART AAA_5 266 402 IPR003593 GO:0016887
Mupr8028g00004 831 MobiDBLite consensus disorder prediction 799 818 - -
Mupr8028g00004 831 Pfam AAA+ lid domain 422 464 IPR041569 -
Mupr8028g00004 831 Pfam AAA+ lid domain 698 739 IPR041569 -
Mupr8028g00004 831 SUPERFAMILY Cdc48 domain 2-like 137 229 IPR029067 -
Mupr8028g00004 831 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
Mupr8028g00004 831 FunFam Transitional endoplasmic reticulum ATPase 231 399 - -
Mupr8028g00004 831 SMART CDC48_2_2 155 221 IPR004201 -
Mupr8028g00004 831 Gene3D - 680 789 - -
Mupr8028g00004 831 MobiDBLite consensus disorder prediction 799 831 - -
Mupr8028g00004 831 Gene3D - 34 137 - -
Mupr8028g00004 831 SUPERFAMILY ADC-like 51 135 IPR009010 -
Mupr8028g00004 831 Pfam Cell division protein 48 (CDC48), N-terminal domain 55 136 IPR003338 -
Mupr8028g00004 831 ProSitePatterns AAA-protein family signature. 646 664 IPR003960 GO:0005524|GO:0016887
Mupr8028g00004 831 CDD RecA-like_CDC48_r2-like 514 674 - -
Mupr8028g00004 831 Gene3D - 493 676 IPR027417 -
Mupr8028g00004 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 491 IPR027417 -
Mupr8028g00004 831 PANTHER AAA-FAMILY ATPASE 427 795 - -
Mupr8028g00004 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 501 790 IPR027417 -
Mupr8028g00004 831 Gene3D - 401 492 - -
Mupr8028g00004 831 Gene3D - 138 234 - -
Mupr8028g00004 831 Gene3D - 235 399 IPR027417 -
Mupr8028g00004 831 SMART CDC48_N_2 55 138 IPR003338 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8028g00004 Mupr-Chr8028 37875 43941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8028g00004 472 735 Calmodulin-binding Proteins AT3G56690 48.864 1.29e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8028g00004 K13525 - gmx:547850 1526.92