Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8011g00002 ATGGATGTTACTTCTCTGGGTTCAAATAGAAATACCCAAACCGACCAACACCCTTTGCTGATGGAGCAGCCAGAAATGCGTAATGGCCATCAGCACATAGTTGACATTACAAGGAATGGTGAAGCTCTAACCACGTCATCTCGTAACGATCAAAACTCTGAAATGCATTTCTCGCAGAATGAAAATCAACCGTCTGGGGACACCCAAGACTCCACTCATCAAACATCTTCATCTTCTGCATCCAGATTAAACTCTAGAAATTCAGCTTCGTTTAGAAGAGGTGAGGGATATGGCCATCGCGGAAGGAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTGTCGTCGTTTTGTCATTGTCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCATGGATCGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTCTACTGGCGTTTTCGAAACCGTTATCAAAGCACTGAACAAGATACCTCTCAACCATCTCAAGGATCTTCAGGAAGCAATCCTCCAGATCGTACTTATACTGCCATCTATATTTCTCATGTCTCAGATGAGGAGAATGGTCATGCTACACAATCAGCCACAAGAAACATAATTCCTGGAGCCTTTACTTCTAGACTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTGTGGTTTGTGGTAGGAAATGTTTGGATCTTTGGAGGGCACACTTCTCCTTCTGATGCTCCACAATTGTATAGGTTATGTGTTGTGTTTCTTACCTTTAGCTGTATCGGATATGCAATGCCATTTATACTTTGTGCAACTATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCACAAAATAGAGGAGCATCATTAGAATCAATTAATGCTCTACCAATCTTCAAGTTCAAGTTGAAGGACAATGAAAATGGTGATGATCAGGATGTCAACACAGCTACAGATGAAGGTGGAATTTTGGCTGCAGGGACAGAAAAAGAGCGGGTGATTTCAGGAGAAGACGCCGTTTGTTGCATTTGCTTAGCAAAATATGTAGATGATGACGAGCTTAGAGAGTTACCTTGCACTCACGTTTTTCACGTAGTGTGTGTTGACAAATGGTTAAAGATTAATGCATCTTGCCCTCTTTGTAAAAGTGAAGTTGGTACAAGTAACGGAGGGTCACCTTCAGCCTGGGACTCCAGTACTCATTAG 1275 0.4235 MDVTSLGSNRNTQTDQHPLLMEQPEMRNGHQHIVDITRNGEALTTSSRNDQNSEMHFSQNENQPSGDTQDSTHQTSSSSASRLNSRNSASFRRGEGYGHRGRSPLNSGLWISVELVVTVSQIIASVVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRYQSTEQDTSQPSQGSSGSNPPDRTYTAIYISHVSDEENGHATQSATRNIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGASLESINALPIFKFKLKDNENGDDQDVNTATDEGGILAAGTEKERVISGEDAVCCICLAKYVDDDELRELPCTHVFHVVCVDKWLKINASCPLCKSEVGTSNGGSPSAWDSSTH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8011g00002 424 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Mupr8011g00002 424 MobiDBLite consensus disorder prediction 44 99 - -
Mupr8011g00002 424 FunFam E3 ubiquitin-protein ligase 347 414 - -
Mupr8011g00002 424 SMART ring_2 364 404 IPR001841 -
Mupr8011g00002 424 Pfam Ring finger domain 364 405 IPR001841 -
Mupr8011g00002 424 MobiDBLite consensus disorder prediction 44 91 - -
Mupr8011g00002 424 SUPERFAMILY RING/U-box 356 411 - -
Mupr8011g00002 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Mupr8011g00002 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 413 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8011g00002 Mupr-Chr8011 4170 6665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8011g00002 1 415 C3H Transcription Factor Family AT1G80400 56.563 2.10e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8011g00002 - - gmx:100819729 764.607