Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr8000g00003 ATGCCACCGAAGTTCGATCCCTCGCAGGTGGTGGACGTGTACGTCCGCGTAACTGGCGGCGAGGTGGGCGCGGCGAGTTCCCTGGCTCCAAAAATCGGGCCGCTGGGTCTGTCTCCGAAGAAAATCGGTGAGGACATCGCGAAGGAGACGTCGAAGGACTGGAAGGGCCTCCGCGTGACGGTGAAGCTGACCGTCCAGAACCGGCAGGCAAAGGTGACGGTGGTGCCCTCCGCCGCCGCGCTGGTCATCAAGGCGCTCAAGGAACCCGAGAGGGATAGGAAAAAGACGAAGAACATAAAGCACAACGGGAACATCGCCCTTGACGACGTCGTTGAGATCGCGAGGGTGATGGCGCCGCGATCCATGGCGAAGGATCTTAGCGGAACCGTTAAGGAAATCCTCGGGACTTGCGTCTCGGTTGGGTGCACCGTCGATGGGAAGGACCCCAAGGATCTGCAGCAAGAGATTTCCGATGGAGACGTTGAGACAAAAAGAGGAACTTATCCTAACCATGACTTGCCGGTAGAACTAAAGAAGTGCGACCTTAACCGTAATCTGCCGGCAGAACCAACACTATAA 579 0.5751 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETSKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNIALDDVVEIARVMAPRSMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGDVETKRGTYPNHDLPVELKKCDLNRNLPAEPTL 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr8000g00003 192 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Mupr8000g00003 192 Gene3D - 82 163 IPR036769 -
Mupr8000g00003 192 MobiDBLite consensus disorder prediction 148 173 - -
Mupr8000g00003 192 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Mupr8000g00003 192 Gene3D - 1 81 IPR036796 -
Mupr8000g00003 192 FunFam 60S ribosomal protein L12 1 81 - -
Mupr8000g00003 192 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Mupr8000g00003 192 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mupr8000g00003 192 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mupr8000g00003 192 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Mupr8000g00003 192 FunFam 60S ribosomal protein L12 82 164 - -
Mupr8000g00003 192 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mupr8000g00003 192 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Mupr8000g00003 192 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr8000g00003 Mupr-Chr8000 12656 13955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr8000g00003 1 162 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.506 2.37e-105 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr8000g00003 K02870 - mus:103992306 314.309