Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7988g00003 ATGCCGATATTAGAGGGACTTCTTAAGCTGCCTGAGAACAGGGAGTGTGCAGACTGCCGGAACAAGGCACCACGATGGGCAAGTGTAAACCTAGGGATTTTCATTTGCATGCAATGTTCCGGAATTCACCGAAGTCTTGGAGTGCATATATCAAAGGTGCGGTCTACAACTTTAGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGAGAAGTCAAATAAGCACTGGGAGGCAAAAATGCCACCAAATTTTGATAGAAATAAATTGGGAATTGAGAAGTTTATCCGTGCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGATGAACTGCAATCAACTTCAAGGTCAGCTGAAATAATCTATAATTTTGATGAGTCACCAAATGGAGTGGCTAGGAGTGGTATTCTGAAGAACAACAGGAGACTTTCTCTTGAAGAAAGCATTCTTGCTAACCACGTGGCACAAATTCTACCACCAATAACAAGATCTCGTGGGGTAGAACCAATAATCAAAGTCCATCCCCTTCACAAGTACTTTGTTAATCCCATTATTCCGTCAAAATCGAGGACTCTGATAGGGTTTCTGATGAATACCTCACCTAGGAGCAACAGGACCAATTGTTACTCTCTCGGCTTCAAACGTTCATGTCTCATGAAATGCTTACTCACGCCATTGGATGCAAAAGTTCCTAGCAACTCTGGGATAAAGTACTTCCACTCACACACTAATGCTCGAGCTCTCGCCAACTCCATACTGAAATTCACAATCCAGTTATTGATGACAATCCATCATTTTCGCGTGCAAATTCAAGCCTTTGTTGATGCCTTAACTGCCATAAGAGATGTTGTATCATCGAAAGAACATCTAGATGTGATTCTTGAAGGCTTACCAGAAGAGTATGAGTCCACGGTCTACTTAATCTCCAGCAAACTGGATCCATTCAATGTTGATGAAATGGAAACCTTACTACTGGCTCCATTAATGTTGTTGAAACTCCAGCTCCAAGAAACCCACCACCTGACCCTTCATAAGCTCATTACAAACTCTAGCCAGTTTGTTGGGCATCATGGCCGTGGTCGTTATGGTCGTGGAGGCCGCTACTCTGGCTGTGGTCGGAACTCAGTACAGTGCCAATTGTGTCACACAAGTATGGTGATGCTTACATTCCCTTTGGTTCCTATGTCCAACCACGCCAGCCCCGCTGGTTATTGCTCCCTGGCATGCTTCCACCACCCAATCATATCCATCTCGGCCAACAATACCATCCTTTCACCCACCTATGGTAACTCCTTCCATTACCTTGCCTCACGCGTTTACCCAGACCTAGGAGCCTCTCACCATGTTACCCCTAATGCCCAAAATATACACAATCTCACCCCTTTGGAGGACATGATCAAATTGTTGTTGGGAATGGTCAAGGTCTCCCTATTTCCTCCACAGGTCACCCATGAGATCCTACTCAAAGGTGCAGTTGGTCCAGATGGGCTATATCGTTTTCCTTCAATGCTACAGAGCATTGTTCACTCAAGTCCTACGGCAAAGCTCACCGCTTGCCATTCCATCTCACTACTTCCACTTACAACAATCCCCTTGATTTAA 1614 0.4436 MPILEGLLKLPENRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNEKSNKHWEAKMPPNFDRNKLGIEKFIRAKYVEKRWASKDELQSTSRSAEIIYNFDESPNGVARSGILKNNRRLSLEESILANHVAQILPPITRSRGVEPIIKVHPLHKYFVNPIIPSKSRTLIGFLMNTSPRSNRTNCYSLGFKRSCLMKCLLTPLDAKVPSNSGIKYFHSHTNARALANSILKFTIQLLMTIHHFRVQIQAFVDALTAIRDVVSSKEHLDVILEGLPEEYESTVYLISSKLDPFNVDEMETLLLAPLMLLKLQLQETHHLTLHKLITNSSQFVGHHGRGRYGRGGRYSGCGRNSVQCQLCHTSMVMLTFPLVPMSNHASPAGYCSLACFHHPIISISANNTILSPTYGNSFHYLASRVYPDLGASHHVTPNAQNIHNLTPLEDMIKLLLGMVKVSLFPPQVTHEILLKGAVGPDGLYRFPSMLQSIVHSSPTAKLTACHSISLLPLTTIPLI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7988g00003 537 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 117 IPR001164 GO:0005096
Mupr7988g00003 537 CDD ArfGap 4 104 - -
Mupr7988g00003 537 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 3 172 IPR044520 GO:0005096
Mupr7988g00003 537 Pfam Putative GTPase activating protein for Arf 4 112 IPR001164 GO:0005096
Mupr7988g00003 537 FunFam stromal membrane-associated protein 1 isoform X1 1 115 - -
Mupr7988g00003 537 Gene3D Arf GTPase activating protein 1 118 IPR038508 -
Mupr7988g00003 537 SMART arf_gap_3 5 115 IPR001164 GO:0005096
Mupr7988g00003 537 PRINTS HIV Rev interacting protein signature 32 49 IPR001164 GO:0005096
Mupr7988g00003 537 PRINTS HIV Rev interacting protein signature 53 74 IPR001164 GO:0005096
Mupr7988g00003 537 PRINTS HIV Rev interacting protein signature 13 32 IPR001164 GO:0005096
Mupr7988g00003 537 SUPERFAMILY ArfGap/RecO-like zinc finger 3 111 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7988g00003 Mupr-Chr7988 16160 22605 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7988g00003 4 104 C2H2 Transcription Factor Family AT4G05330 48.598 1.15e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7988g00003 K12486 - gmx:100803735 328.176