Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7979g00006 ATGGGTCGTCCAAAATTAATCTTGAAACCCATTTCAAATAGGAGAGAACGTGATTTGGCTTTCATGAAGAGAAAAAAGGCACTAATGAAGAAAATGTCTGAATTTTCTACCGTATGTGGAGTCAAAACTTGCTTAATTATATATGATGGAAATGGTGATGCTCTACCATTGACTTGGCCCCAAGACCCCAATGAGGTGCACTCCATCATCAAAAGGTATGAGGGTGTAAAGAATGAGAAACTTCCCAAGAACTTTGATCTCAATAACTTTTTTGAGATTAAGAAGAATATGGTTGAAGGTGAGATTTCCAAAGTTCAAAAAGAGACCCTCAAGATCAAATATCCAACTTGGCATCCAAGTTTCAACAACCTGGGTATAGAGGAGCTGAGGAATTTCATGGCTAGGTTGGACATTAAGCTTGAAACTTGTAATCATCAACGAATGGAAGTGTTACGCAAGCATCAAATTGAAGCAGCCAACTTCAATCTTATGCAATGCATGGTTCAATCGGAGAGTGCTGCCCCAAACCCAACCCAACTCAATTTCATGCAGAACATCTCTCAAAATCAACTTATCCTTGCTCCTCCTATGAAGCCACTTAATGATGGTAACTTAGTAGCATCTTACTTACTTAATCTTGATAGAAGTTCTAGTTCTCAATCTCAAATTCTTGATAGAGGTTCTAGTTCTCAATCCCATATTCTTGATAAAGGTTCTAGTTCTCAATCCCAAATTCTTGATAGATGTTCTAGTTCTCAATCCCAAATTCTTGATAGAGGTTCTAGTTCTCAATACCAAATGCTTAACTTTGATCCAAATCTTATGCAATTGAGGGAAAAAAATAAAGGAGTGGTGCATATTACTAATCATGTTGATGTGCCTCTAGATTGTACAAATCAAATTCATGCTTTTGAAAATTCTACAAATCAACTTGATGTGCCTCTGGATTGTGCAAACCAAATTGGGACTTTTGGAAATTCTACAGATAAACTTGATATGCCTGTAGATTTGACTACTGCACTTGATGAGTGTTTAGACTATTTTAGTCAATTATGTGAAATTGAAGATTTGGCAGGTCAATTTGATGAGGTTGTGAATTGGACTAGGCAACCTGATGAGTCTATAAATTGGCCCAATCAACATGGTGTGCCATTGATTGAGGGAAGTACTAAAGCAATGAATGGTGCTACTAATTATGATACAAATTTTCATGGATATGAACAGAATCCAGAGTCCTCACTTTGCTATTACAATGGAGGTATGCAATCAATGCAACCCTATAACTATAATGCTACATTTCAGAATATTGCTTCTCAGTCTGAGAATGTGCAACAAAGAGTATCTTTGCCTACCCTTCCACCACCAGTGGATGAATTTCAGACAAATCACTATAACAACATGCTTCAAAATCCGTCATACAACCGAATCATCTAG 1434 0.3696 MGRPKLILKPISNRRERDLAFMKRKKALMKKMSEFSTVCGVKTCLIIYDGNGDALPLTWPQDPNEVHSIIKRYEGVKNEKLPKNFDLNNFFEIKKNMVEGEISKVQKETLKIKYPTWHPSFNNLGIEELRNFMARLDIKLETCNHQRMEVLRKHQIEAANFNLMQCMVQSESAAPNPTQLNFMQNISQNQLILAPPMKPLNDGNLVASYLLNLDRSSSSQSQILDRGSSSQSHILDKGSSSQSQILDRCSSSQSQILDRGSSSQYQMLNFDPNLMQLREKNKGVVHITNHVDVPLDCTNQIHAFENSTNQLDVPLDCANQIGTFGNSTDKLDMPVDLTTALDECLDYFSQLCEIEDLAGQFDEVVNWTRQPDESINWPNQHGVPLIEGSTKAMNGATNYDTNFHGYEQNPESSLCYYNGGMQSMQPYNYNATFQNIASQSENVQQRVSLPTLPPPVDEFQTNHYNNMLQNPSYNRII 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7979g00006 477 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mupr7979g00006 477 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr7979g00006 477 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mupr7979g00006 477 PANTHER SERUM RESPONSE FACTOR HOMOLOG 5 204 - -
Mupr7979g00006 477 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mupr7979g00006 477 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr7979g00006 477 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr7979g00006 477 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr7979g00006 477 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Mupr7979g00006 477 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr7979g00006 477 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7979g00006 Mupr-Chr7979 17976 19409 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7979g00006 1 134 Type I MADS-box Gene Family AT5G55690 35.714 2.96e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr7979g00006 SRF-TF 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7979g00006 - - ccaj:109791338 471.47