Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7966g00002 ATGGTAAGGGGAGGAAAGTTTAGTGGCAAACGCAGTTTCAGAAAAAGGGTTCGGTCAAAGGAGGGATGTTCTGATGACTCGGATGAGGACTATGTGGTTTCAGATGAAGGTAGAGAGGCATCTGACTATTATTGCTCCTCGTTAGATGGATGTGCATCGGAGGAGAGTTTTGGCAGTTTAATGGAAGAGGAGGAGGAGGAATTTCAAAGAGTGAGGAATTTCAATAGATCCAAGGCAAAAAAGGGTATTGCTGGTCAGCGGAAAAATGCCAGTAACAACTCACACAAGAGGGGAAGGGTTGCATATGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAATTCAAGAAGTGAGGATTTTCAATAGGTCAAAGGCCAAAAATGGAGTATGCAGTAAGAAAAAAAGAGCAGGTAAAATCTCCCCGAAGAGGGGAAGGAAAATACGTGCAGAACAACTGGAAGAAGAGGAGGAGGAGGAAGAGGAGAAACAGGAGGAGAAGGAGAAGGTTGAGAGACATGGAGATGAGGCAGAAGAAGAGGAAGGAGATAGAGATGGAGAGGATGAAGATTTTGACTATGATGATGAGGATGAGGATGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGAGGGGGAGAAAGAAGAAAAATGATGGCATGAAAATAGACAAGGTTTTGCAGAAGAAAAGGGCCTCTGTGGTTTCTACCAGAGGTCGAAAAAGACGGAGTTCTAGACCATCAAAGAAGCCCTTGAGAAACAAAAGAGGAAAGAATGGGAGGTTAAGGAAGAAAGAAATATGTGATGATGAAGATGATTTCATAGATAACGGCCCAGCCATTGGGACAACAAGTAGGAGAAGACGTGGCCAGAAGAGGAGAAGGGTGCTTCTTTCGGATTCAGATTATGCATGTTCTGGATCATCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAGATTGTGTGGAAGTTTGAGAAATAACTTGAGGAGTTCATCCAATCTAATAAATAATGAAGAGGTTGGTGTCCATGAGGATCAACATCAGCAGCGGAAGCCTCCAGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGGTTTAAAAAGTGAGGTGGGAAAGCAAATGTGTGGAATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTGCTAAATTGTTGCACTCACTACTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACAACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAACCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAATATGTCATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACATATTGTGTAGGTTTGGGGCGGGAAGTTCCCGAAGGTAATTGGTATTGTGATGGGTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGAGTGACAATCCAGAACCTTCCTGTTAGACCACCCCCTGTTCTACATGTACGAGAAAGTATAGACCTCAACTTAATTTCGTCACCCCGAGCAGCTTTTAACCAAGGCTTTGGGCATCTTTCATCTTCTAGATTTAGTGGCAGAAGTGTCGAAGGAGCTTCTCCCGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAACTACTTTCATCTGGAGGGGCACCTGGCAGAACCAATGGTATTTCAGCTACCAGTTCAACCAGTAACTTATATAGCTCTCAAGTTGATCAAAGTAGGGGAAATGCCATTCTACATGCAAGGACACAGGATGTGGGAACATCATACCACACTTTTTTTGACGAGAGATTATGCAACAATACCTCTCCATTAATGCAGAATGGGCCGTTATGGCCTGGACTTATGGGGACACCCCCAGTACCAGATTGCGAACAAGTTCATCAGTTCGGCAGATCAAACATTGTTCCCGATGGTGGCTTATCCCCTGCTGTAAGAGAAGAGAGTAACTTTCACATTGCAAAGGAGCAGTTGCAGTCAATGGTTAAAAACCACCTGAAGAGCTTGTCCCAAAATATTGATTTAGGCCACAGTACTTTCAAGGATATTGCAAGGAGTTCAATGCACACCATACTAGCTGCTTGTGATCTTGAGCACAAGAAGAGTGAAGTTTGCTCTGTGCCTCCACCGTCCGCCTGTCCGCACATGGAACTAATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCATGCTTTGATTCTTTTGTAGGAGATGTGGTGAAAAGGATTTTGGACACAAGAATTTCATCACAGTGGTTACGATTAGGTCTCTAG 2568 0.4408 MVRGGKFSGKRSFRKRVRSKEGCSDDSDEDYVVSDEGREASDYYCSSLDGCASEESFGSLMEEEEEEFQRVRNFNRSKAKKGIAGQRKNASNNSHKRGRVAYEEEEEEEEEEEEEEEEEEEEIQEVRIFNRSKAKNGVCSKKKRAGKISPKRGRKIRAEQLEEEEEEEEEKQEEKEKVERHGDEAEEEEGDRDGEDEDFDYDDEDEDDEFLPEEEDYSDEEEEMRGRKKKNDGMKIDKVLQKKRASVVSTRGRKRRSSRPSKKPLRNKRGKNGRLRKKEICDDEDDFIDNGPAIGTTSRRRRGQKRRRVLLSDSDYACSGSSDFEFTISEEEREQVREAKRLCGSLRNNLRSSSNLINNEEVGVHEDQHQQRKPPGRKGKEKIEEPQGRKGKEKVEGLKSEVGKQMCGICLSEEDKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVTIQNLPVRPPPVLHVRESIDLNLISSPRAAFNQGFGHLSSSRFSGRSVEGASPVSGGAPTLSERRWIHRQIQQLLSSGGAPGRTNGISATSSTSNLYSSQVDQSRGNAILHARTQDVGTSYHTFFDERLCNNTSPLMQNGPLWPGLMGTPPVPDCEQVHQFGRSNIVPDGGLSPAVREESNFHIAKEQLQSMVKNHLKSLSQNIDLGHSTFKDIARSSMHTILAACDLEHKKSEVCSVPPPSACPHMELMAGGQTSLIKGCCSSCFDSFVGDVVKRILDTRISSQWLRLGL 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7966g00002 855 ProSiteProfiles Zinc finger PHD-type profile. 497 546 IPR019787 -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 188 220 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 136 151 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 247 274 - -
Mupr7966g00002 855 SMART PHD_3 499 544 IPR001965 -
Mupr7966g00002 855 Coils Coil 92 129 - -
Mupr7966g00002 855 SUPERFAMILY FYVE/PHD zinc finger 469 545 IPR011011 -
Mupr7966g00002 855 Pfam Ring finger domain 406 449 IPR001841 -
Mupr7966g00002 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 470 IPR013083 -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 1 38 - -
Mupr7966g00002 855 ProSiteProfiles Zinc finger RING-type profile. 407 449 IPR001841 -
Mupr7966g00002 855 Coils Coil 151 191 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 56 306 - -
Mupr7966g00002 855 Pfam PHD-finger 499 545 IPR019787 -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 104 123 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 362 395 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 221 244 - -
Mupr7966g00002 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 547 IPR013083 -
Mupr7966g00002 855 ProSitePatterns Zinc finger RING-type signature. 426 435 IPR017907 -
Mupr7966g00002 855 SUPERFAMILY RING/U-box 406 455 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 173 187 - -
Mupr7966g00002 855 SMART ring_2 407 448 IPR001841 -
Mupr7966g00002 855 CDD RING-HC_Topors 405 452 - -
Mupr7966g00002 855 PANTHER F18C1.6 PROTEIN 147 844 - -
Mupr7966g00002 855 Coils Coil 329 349 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 357 395 - -
Mupr7966g00002 855 MobiDBLite consensus disorder prediction 639 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7966g00002 Mupr-Chr7966 4693 7729 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7966g00002 494 543 C2H2 Transcription Factor Family AT3G01460 46.154 2.45e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr7966g00002 PHD 4.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7966g00002 - - gmx:100797448 1332.39