Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7895g00006 ATGGGGAGGGGAAAGATTGAAATCAAAAGGATTGAGAACACAACAAATCGGCAGGTGACCTTCTGCAAGCGAAGAAATGGGCTTCTGAAGAAAGCTTATGAGCTATCAGTGCTGTGTGATGCAGAAGTGGCCCTCATTGTCTTCTCTAGCCGTGGCAGACTCTATGAGTATTCAAACAACAATAAGTTGCCATTAATTGTTCGTCAGTCTGCGTAG 216 0.4444 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNKLPLIVRQSA 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7895g00006 71 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Mupr7895g00006 71 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr7895g00006 71 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mupr7895g00006 71 FunFam MADS-box transcription factor 21 13 70 - -
Mupr7895g00006 71 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr7895g00006 71 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr7895g00006 71 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr7895g00006 71 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr7895g00006 71 SUPERFAMILY SRF-like 2 62 IPR036879 GO:0003677|GO:0046983
Mupr7895g00006 71 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mupr7895g00006 71 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Mupr7895g00006 71 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7895g00006 Mupr-Chr7895 22790 23263 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7895g00006 1 68 MADS-box Gene Family AT4G09960 88.235 1.21e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr7895g00006 SRF-TF 9.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7895g00006 K09264 - rcu:8269985 124.405