Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7874g00004 ATGGATCCGATGAAGAAGCGCAAGCTTGAAGAGAACGGCTTCAACGATTCCGACCCTCTGAAACTCTCCCCCTCCGAAGCGCGAAAACTCATCGAGCGATTCACCCCCGACCAGCTCCTCGAAATCCTTCAGAACGCCGTGGTTCGCCACCCCGACGTCCTGGCCGCCGTGCGCGCCGCCTCAGACCCCGATGTCTCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGGTGGGACACCACCACCGACGGCCTCCGCTCGCTCTTCTCCACCTACGGCGACCTCGAGGAGGCCGTCGTGATCCTCGACAAGGCCACCGGCAAGTCCAAGGGCTACGGCTTCGTCACGTTCCGCCACGTGGACGGCGCGCTCCTGGCCCTGCGCGAGCCGAGCAAGCGCATCGACGGGCGCGTGACGGTCACGCAGCTCGCGGCCGCCGGGAACACCGCGTCGAACGCCAACGCCGCCGACGTGGCGCTCCGCAAGATCTACGTGGCCAACGTGCCGCCGGACCTCCCCGCCGACAAGCTCCTCGCGCACTTCTCCGTCTACGGCGAGATCGAGGAGGGGCCGTTGGGGTTCGACAAGCAGACGGGGAAGTCGAAGGGGTTCGCTTTGTTTGTTTATAAGACTCCCGAGGGGGCTCAGGCTGCGTTGCTGGATCCTGTGAAGGCTGTGGAAGGGAGGCAATTGAGTTGTAAATTGGCGATAACGGATGGGAAGCAGGGTAAGCGGCCCGGGCCGGATGGGCCCCAGGCCCATGGGAATGTTCCGCATGGTCATGGGGACGGAGTGGGAGCGGGAATGGGGATGGGGATGGGGATGCCCCCTGCTGCGGGCTCTGGGCCGGGCCAGTATGGCGGCCCGGTTGGGTTGGGTTCTTATGGCAGCGGGTATGGTGGGCAGCCTCCGTTGGGGAATCATCCTTTGAATTCGTCGAATCCTGTGCCTGGGTCTATGGCAGGTGCTGCAGGCTACGGTGCAGGGATGGGTGGGCCTTATGGTGGGTACGGTGGGCCAGGCTCGACGGGCTATGGTGGTGCTGGTGGGCTGGGAGGAGGTAATGGAGTTGGTGTTGCTGGTGGTGCTGGTGGGCTTGGTGGTTCTGCTACTGGTTCTTTGTATAGATTACCGGGTTCCGCTGGAATGCCTGCTGGTGCCGGAGGGTATCCGGATGGTGGACACTATGGTTTATCAGCTTCAACTGGGTACCAGAATCAGCATCACCCTCCTTCTGGGGCTTCACCTGTGCCTAGGGTTCCACCCGGTTCGATGTATCCCAATGTGTATCATCGCTTATTGGGCTCAGATGCTTTGTGTGCCTCTGGTGATTGCGTGAATTGCAGACTATGTACTCTGGTGTAA 1362 0.6204 MDPMKKRKLEENGFNDSDPLKLSPSEARKLIERFTPDQLLEILQNAVVRHPDVLAAVRAASDPDVSQRKLFIRGLGWDTTTDGLRSLFSTYGDLEEAVVILDKATGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNTASNANAADVALRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKAVEGRQLSCKLAITDGKQGKRPGPDGPQAHGNVPHGHGDGVGAGMGMGMGMPPAAGSGPGQYGGPVGLGSYGSGYGGQPPLGNHPLNSSNPVPGSMAGAAGYGAGMGGPYGGYGGPGSTGYGGAGGLGGGNGVGVAGGAGGLGGSATGSLYRLPGSAGMPAGAGGYPDGGHYGLSASTGYQNQHHPPSGASPVPRVPPGSMYPNVYHRLLGSDALCASGDCVNCRLCTLV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7874g00004 453 MobiDBLite consensus disorder prediction 1 15 - -
Mupr7874g00004 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Mupr7874g00004 453 PANTHER GEO13361P1-RELATED 51 346 - -
Mupr7874g00004 453 MobiDBLite consensus disorder prediction 237 270 - -
Mupr7874g00004 453 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Mupr7874g00004 453 Gene3D - 150 263 IPR012677 -
Mupr7874g00004 453 SMART rrm1_1 69 141 IPR000504 GO:0003723
Mupr7874g00004 453 SMART rrm1_1 161 233 IPR000504 GO:0003723
Mupr7874g00004 453 MobiDBLite consensus disorder prediction 397 419 - -
Mupr7874g00004 453 Gene3D - 44 149 IPR012677 -
Mupr7874g00004 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 218 IPR000504 GO:0003723
Mupr7874g00004 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Mupr7874g00004 453 MobiDBLite consensus disorder prediction 1 21 - -
Mupr7874g00004 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Mupr7874g00004 453 SUPERFAMILY RNA-binding domain, RBD 153 267 IPR035979 GO:0003676
Mupr7874g00004 453 FunFam UBP1-associated protein 2C isoform A 51 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7874g00004 Mupr-Chr7874 15235 18473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7874g00004 156 251 C2H2 Transcription Factor Family AT2G19380 36.458 5.29e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7874g00004 K12741 - gmx:100794097 546.584