Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7760g00003 ATGCGGCGTTGCATTATTCCGACGCTGTTGGCTGTGACCGCCGTGCTGCTGTCTGCGGTGCAGAGCGGTTTCCTCCCTCTGGAGCGGGGGATTCCTCTGAGCCGCCGCGTGGAGGTGGCGGCGCTTAGGGCCCGCGACAGAGCCCGCCACGCCCGAATGCTGCGCGGCGTCGTCGGCGGCGTCGTTGACTTCTCCGTCCAAGGCTCCTCCGATCTGTCCGTTGGGTCCGGGTTGTATTTTACCAAAGTGAAGATGGGAACTCCTCAGAGGGAATTTAACGTTCAGATTGATACGGGAAGTGATATATTGTGGGTTAATTGTAATACTTGTAGTAATTGTCCTCAATCTAGTCAACTAGGGGTGAGAATTTTGAATTTGCATTTGCATTTGCATTTGATTTTGGTGCTTGTTTTTGATTTGGAGCTTAATGTGTTGCGCTTATTGTTGCTTGTGTTTTGTGGTGTGCAGATTGAGCTCAATTTCTTTGACACGGTTGGTTCTACCACGGCTGCGTTGGTTCCCTGCTCGGACCCAATTTGCACTTCTGGGGTTCAAGGTGCTGCTGCTGAGTGCTCCCCTCAGGTTAATCTGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGAACTTCGGGTTATTATGTTTTGGATTCAATGCATTTTGAAATGATCATGGGACAGTCTCCCACGACTAACTCTTCGGCTACCATTGTTTTTGGGTGTAGCACCTACCAATCTGGAGATTTGACTAAGACCGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCTGTTGTATCACAATTGTCATCACGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAAGGAGATGGTGATGGAGGAGGCATTCTAGTTCTTGGCGAGATTTTGGAGCCAAGTATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTGAATCTTCAGAGTATTGCTGTGAATGGGCAACTCCTCCCAATTAATCAAGCTGTATTTGCAACATCTAACAACCGAGGAACTATAGTTGACTGTGGTACAACGTTGGCATATCTTGTTCAAGAAGCTTATGATCCTCTTGTCACTGCAATAACTACTGCTGTGTCACAATCTGCTAGGATCACTCCTTCTAAAGGAAGCCAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTCGGTCAGTTTAAACTTTGAGGGTGGAGCGTCAATGGTTTTAAAACCAGAGCAGTACCTTACGCATAATGGTGACCTTGATGGTGCTTCAGTGTGGTGCATCGGTTTCCAGAAAGTGCAGGAGGGAATCTCGATTTTAGGAGGTTCTTTGGATGTAAACGTTTCCGTGACTACAAGCAAGGATGAGTACATCAATGCGGGACAACTAAGTGTCAGCAGCTCCGAAATACGCATTCTTTCTAAGTTACTACTTCTAAGCATTGTGGCTCTCTATATGTACATAATGTTGACTGTCGCCGCCGCGACTTCATCGCTTTACGTCGGAGACCTCCACCCTGATGTCTCCGACGGCCACCTCTTCGACGCTTTCGCGGAGTTCAAGAGCCTCTCTTCCGTTCACGTCTGCAGAGACCGCGTGACAAGGAAGTCGCTCTGTTACGGTTACGTCAACTTCCTATCTCATCAAGACGCAATTCGTGCAATTATGTTGAAGAATAATTCTTATCTGAATGGAAAAGTGATAAGAGTCATGTGGTCACACCGTGATCCTTATGCAAGGAAAAGTGGCAGAGGGAATGTGTTTGTTAAGAACTTAGCTGAATTCATAGATAATGCAGGGCTACATGATTTATTTAAAAAATATGGGAATATTATGTCCAGCAAAGTTGTCATGTCTGAGGATGGGAAAAGCAACAAAGGGCATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATGATGCCATTGAGGAGCTGAATGGCTCTACTGTGAGAGACAAGCAGATATATGTTGGGAAGTTTGTCAAAAAAAGTGACCGCATTTTGCCTAGCCATGATGCCAAATTTACAAATTTGTACATTAAAAACTTGGACTCAGATATTTCGGAAGCACTTCTGCAGGAAAAGTTCTCCTCTTTTGGGAAAATTTTTAGCTTGGCTATTGCAAGGGAAGACAATGGGCTATCAAAGGGTTTTGCATTTGTGAACTATGATAATCCAGATGATGCTAGAAAGGCCATGGAAGCAATGAATGGAGTAAAACTTGGTAGTTCAAAGAATCTGTATGTAGCTAGGGCACAAAAGAAGGCTGAACGTGAGCAAATCTTGCATCATCAATTTGAGAAGAATCGCAAGGAACAAATATTGAAATATAAGGGATCTAACATATATGTGAAGAACATTGATGATGGTGTTAATGACAAAGAACTAAGAGATCTGTTTAGTTTATGTGGCACAATAACTTCTGTAAAAGTTATGCGAGATGACAAAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCACCCCTAAGGAGGCTAATGTAGCTGTCAGCACTTATCATGGGTTCATGTTCCATCGTAAACCACTGTATGTTGCTATTGCTCAGAGGAAAGAGGATAGGCAAACACAGTTGAAGCTCCACTATGCACAGCAACAAGCTGGACTGAATGGACCTTCAACTGCAGTTATACCTGGTGGATTTTCACCTTACTTCTATACTGATGTTGCTTCACAGATGTTTCAATCTGGGCCGTTATATCAACCTGTAGGATTGAGGTCAGGATGGAGGGCTAATGACTTTGCCCCTCCCACTAGATCATTTCAACAGTCACCGGTTCCTATTGTTTCTAACAATACTAGGCATCATAGGCAAAACAGGGGCATGATGAATGGGTATATGAGTTCACTGGGAAAAGATCACTCTGGTCTATATGTCCCGCAACTGCAACACTATTATCAGTCAGTGGCCCCTTCAAGAGTCGACCTAGCTGCAAAGATTGCAGGAATGCTTTTGGAGATGGACAATGGAAAATTGTCGCTTCTCCTAGAATCAAGAGAGCTTTCTGTTAAAGTGGAAGAAGCCCTGCAAGATTTCAACCTTGAGGAGCTTAGATCATGA 3105 0.4428 MRRCIIPTLLAVTAVLLSAVQSGFLPLERGIPLSRRVEVAALRARDRARHARMLRGVVGGVVDFSVQGSSDLSVGSGLYFTKVKMGTPQREFNVQIDTGSDILWVNCNTCSNCPQSSQLGVRILNLHLHLHLILVLVFDLELNVLRLLLLVFCGVQIELNFFDTVGSTTAALVPCSDPICTSGVQGAAAECSPQVNLCSYTFQYGDGSGTSGYYVLDSMHFEMIMGQSPTTNSSATIVFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVVSQLSSRGITPKVFSHCLKGDGDGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVNGQLLPINQAVFATSNNRGTIVDCGTTLAYLVQEAYDPLVTAITTAVSQSARITPSKGSQCYLVSTSIGDIFPSVSLNFEGGASMVLKPEQYLTHNGDLDGASVWCIGFQKVQEGISILGGSLDVNVSVTTSKDEYINAGQLSVSSSEIRILSKLLLLSIVALYMYIMLTVAAATSSLYVGDLHPDVSDGHLFDAFAEFKSLSSVHVCRDRVTRKSLCYGYVNFLSHQDAIRAIMLKNNSYLNGKVIRVMWSHRDPYARKSGRGNVFVKNLAEFIDNAGLHDLFKKYGNIMSSKVVMSEDGKSNKGHGFVQFESEESANDAIEELNGSTVRDKQIYVGKFVKKSDRILPSHDAKFTNLYIKNLDSDISEALLQEKFSSFGKIFSLAIAREDNGLSKGFAFVNYDNPDDARKAMEAMNGVKLGSSKNLYVARAQKKAEREQILHHQFEKNRKEQILKYKGSNIYVKNIDDGVNDKELRDLFSLCGTITSVKVMRDDKGISKGFGFVCFSTPKEANVAVSTYHGFMFHRKPLYVAIAQRKEDRQTQLKLHYAQQQAGLNGPSTAVIPGGFSPYFYTDVASQMFQSGPLYQPVGLRSGWRANDFAPPTRSFQQSPVPIVSNNTRHHRQNRGMMNGYMSSLGKDHSGLYVPQLQHYYQSVAPSRVDLAAKIAGMLLEMDNGKLSLLLESRELSVKVEEALQDFNLEELRS 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7760g00003 1034 CDD pepsin_A_like_plant 79 448 IPR034161 -
Mupr7760g00003 1034 PANTHER RNA BINDING PROTEIN 503 567 - -
Mupr7760g00003 1034 SMART rrm1_1 789 861 IPR000504 GO:0003723
Mupr7760g00003 1034 SMART rrm1_1 593 666 IPR000504 GO:0003723
Mupr7760g00003 1034 SMART rrm1_1 685 758 IPR000504 GO:0003723
Mupr7760g00003 1034 SMART rrm1_1 505 578 IPR000504 GO:0003723
Mupr7760g00003 1034 Pfam Xylanase inhibitor N-terminal 79 300 IPR032861 -
Mupr7760g00003 1034 PRINTS Pepsin (A1) aspartic protease family signature 348 359 IPR001461 GO:0004190|GO:0006508
Mupr7760g00003 1034 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Mupr7760g00003 1034 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 592 670 IPR000504 GO:0003723
Mupr7760g00003 1034 Gene3D - 593 666 IPR012677 -
Mupr7760g00003 1034 Gene3D - 670 769 IPR012677 -
Mupr7760g00003 1034 Gene3D - 770 877 IPR012677 -
Mupr7760g00003 1034 FunFam Aspartic proteinase-like protein 2 302 457 - -
Mupr7760g00003 1034 SUPERFAMILY RNA-binding domain, RBD 505 672 IPR035979 GO:0003676
Mupr7760g00003 1034 Gene3D - 498 592 IPR012677 -
Mupr7760g00003 1034 FunFam Polyadenylate-binding protein 496 588 - -
Mupr7760g00003 1034 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 788 865 IPR000504 GO:0003723
Mupr7760g00003 1034 SUPERFAMILY PABC (PABP) domain 942 1024 IPR036053 GO:0003723
Mupr7760g00003 1034 MobiDBLite consensus disorder prediction 935 954 - -
Mupr7760g00003 1034 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 504 960 IPR006515 GO:0003723
Mupr7760g00003 1034 FunFam Polyadenylate-binding protein 675 770 - -
Mupr7760g00003 1034 ProSiteProfiles Peptidase family A1 domain profile. 79 473 IPR033121 -
Mupr7760g00003 1034 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 504 582 IPR000504 GO:0003723
Mupr7760g00003 1034 SMART poly_2 974 1030 IPR002004 GO:0003723
Mupr7760g00003 1034 Pfam Poly-adenylate binding protein, unique domain 981 1025 IPR002004 GO:0003723
Mupr7760g00003 1034 CDD RRM4_I_PABPs 787 865 - -
Mupr7760g00003 1034 SUPERFAMILY RNA-binding domain, RBD 684 869 IPR035979 GO:0003676
Mupr7760g00003 1034 Gene3D Acid Proteases 66 300 IPR021109 -
Mupr7760g00003 1034 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 790 858 IPR000504 GO:0003723
Mupr7760g00003 1034 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 686 752 IPR000504 GO:0003723
Mupr7760g00003 1034 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 594 663 IPR000504 GO:0003723
Mupr7760g00003 1034 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 506 576 IPR000504 GO:0003723
Mupr7760g00003 1034 Gene3D - 977 1028 - -
Mupr7760g00003 1034 Gene3D Acid Proteases 302 458 IPR021109 -
Mupr7760g00003 1034 SUPERFAMILY Acid proteases 74 450 IPR021109 -
Mupr7760g00003 1034 FunFam Polyadenylate-binding protein 771 879 - -
Mupr7760g00003 1034 Pfam Xylanase inhibitor C-terminal 318 450 IPR032799 -
Mupr7760g00003 1034 SMART rrm2_1 685 757 IPR003954 GO:0003676
Mupr7760g00003 1034 SMART rrm2_1 505 578 IPR003954 GO:0003676
Mupr7760g00003 1034 SMART rrm2_1 593 666 IPR003954 GO:0003676
Mupr7760g00003 1034 FunFam Polyadenylate-binding protein 589 674 - -
Mupr7760g00003 1034 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 684 762 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7760g00003 Mupr-Chr7760 10831 26671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7760g00003 503 1025 Eukaryotic Initiation Factors Gene Family AT2G36660 52.281 4.50e-175 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7760g00003 K13126 - gmx:100798828 777.319