Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7758g00003 ATGTCAGAAATGCGGGTGTCGGAGCTCCACTTGAAGAAGGAACTGACCCAAATCCGAAAGGCTGCTCGAGTTCTCAGAGATCCTGGCACCACGTCTTCTTGGAAGTCACCTCTCAGTTCCTCAAGATCCGTCGCTGCATGGAACATGGACAGTGGAAGTAGAAGGTTCAGCACTAATTCTCAACTTGCCAACAATGACAAGAATAAAGACAAAGACAAAGAGAAGAAGGTCTTCTTGTACAATTGGAAGAACTATAAATCTTCCAGCGAGAAATACAACGAGGAAGAAGAAGAAGAGGAGGAAGAAGAAGAAGAAGAAGACGATGGTGGTGGATCTTCGTCGCTTCTCGGGGACAGAGACAGAGACAGTTTGAGCGATGCACGCAATGGTTGTGACTCGAAGAGCGATACTTACTTGGCTGCTGCTGCCGGCACTCATTCTTCCATTTTCCGATGTGGGGATGCCAATCTTGTTTCCCGAAGAACGGTTCCCGTTAAGAAAAAGAGTAAGAAAAGTAGTCCCCATTTTGATTTTTTAGCCAAGTATCAACACCGTTCGGGAAGAAATTTTGTCACTTCTTCCAAGGCGTTGCCTTTTTTCAGCAGGGATGACTCGGTTGAACATGAACACTCCGATGATGATGATGATGATGATGATGATACCGAGGATTACACAAATTCTGAGGGTGTGAGAGTGAGACCACTTTCGGGGTCTTCTCCTTTGCTTCTCAAACTGAGGCAAAAGAACTGGTCTCGCTCTTCCTCTAAGTTTCTCAGAAGAAGCCGAAAAGAGGACTCTTCTTATACTTATAGTACCCCTGCATTGTCAACTAGTTCTTATAATAGGTACGCCCACCGTTATCCCAGCACTCTTGGATCCTGGGATGGCACCACCACCTCCGTGAATGACGGTGATGGCGACGATGAGATTGATGATCATTTGGATTTACCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCCAAGAGAACCCCTAAACATAGAGGAATGTGTGGGAGTTGTTATTCTCCCTCTCTGTCTGACACTTTGAGGAGGAAAGGGAGTAGCATGCTATGTGGAAGTCAGACTATTTATCCCAGACACCGGAGATCCGTTTCTGCCTCTCACAAGCGGAGACTTCCTTTGAGGAGTGCTCGTGGTGTTATTCCATTGCTCACTAACAGTGGTGATGTTAGAGAAGGCTCATCTGTGGGTACTGGTCGGAGTGATGATGAACTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGATTGGATGGAAGAAGATGGTCATCTAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGCGAAGGGGAAGATGAGGGCACACCAGAAAATAGTCGAAGTTTCAGCCAGAAGTATAGGCCTATGTTCTTTGGTGAACTGATTGGGCAGAATATTGTAGTTCAGTCACTTGTCAATGCTGTTTCGAGGGGACGAATTGCTCCCGTCTATCTTTTTCAAGGTCCCCGTGGGACTGGCAAAACATCAACGGCTAGGATATTTGCAGCTGCCTTGAATTGTGCGAGTCCCGATGAGAATAAACCTTGTGGCTACTGCAGGGAATGTGCTGATTTCATGTCTGGTAAGAGCACTGATCTATTGGAAGTTGATGGAACTAATAAGAGAGGAATTGATAAAGCTAGATATCTACTGAAAAGATTGTCAACTGGGTCATCTTCAGCCTCCCCTCAATATACAATTTTTGTTATTGATGAGTGTCACTTGTTGCCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCACCCCAGCGAGTTGTGTTCATATTTGTAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATTCATTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGGAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTAGAGTTAGCAATGTCATCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATTATGGACATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCATTCTTTGGTGGACGGATGAATGAATCAGAGTTGGAAAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAAAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCAACACTATTGCAGCTTGGTTCTACACCTTCTCCAGATCTTACTCAGTCAAGTAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGACGTTACCTCTTCCACACACAAGTCAGATCCTCAATATATGTCTCGAAAGTCAGCATACACTGCATCCCAGCAAAAAGCATTAAATGATAATTCCAACCATCAAAAGGATATATCCTCAAAGATTGATGGTTTCAGCTTGAAATCAAAGCCGTCAAACAGCCCGGTCCTAGATGATGGCTCCACGGTGGTCTCATCTGATGATCTTATGGTTGGGAATACAGTGTATAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATTGGGAGGTGTCACTCTAAGACATTAAAGCAGCTGCTACACAATCATGGAAAGCTTGTGTCTGTATGTGAAGCAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGGAGATGCAGATATTAAAGTTAGGGCGGAGAGATTTTTAAGAAGCATTACAAACTCCATGGAGATGGTTCTTAGGCGCAATGTGGAGGTCAGAATAATCCACTTGCCTGATGGTGAAGGTGGGAAACAGGTTAATCTATTGGGTCTAAAGCAGGCAGAGTCAACAGTGGCTAGTGAGAAGGAACTAAGACAAAGGCATATGAAGGGAACGGAGTCTTATTCTAGTTTGCCTCCTGTACTGGATGGAAACCTTCAATCTACCACTGCTTCATCAGATATTTTGGCTGAAGGAAATGGTGTGAGGGAGAGGAGACAGGATAATCCAATGCAGAGAATTGAATCCATCATTCGCGAGCAGAGGCTGGAAACTGCCTGGTTACAGGCGGTAGAAAAAGGTTCCCCTGGATCCTTGAGTCGTTTGAGACCTGAGAAGAATCAAGTGCTGCCACAGAATGGTGTTGACCCTATGGAGTCCATGGATTCAACCAGATTTTCCTCTCACCAGGAATGGGAAGATGACCCCACTAATGAAGTCAAAGTTTTGAGCCTTATAAATGGAAGGGTCCCACAGAAGGATCAGATTAGTAGAAAGGCAGATCGTTGTCCCATGTCTCCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCCGGGATATGAATCAGGGTCGGGAGCTGGTGGTTGTGGATTTTTATGTTGGAATAAGTCAAAGCCTAGAAGGGTAATAAAGGTAAAAGGTGGCACCCCAGTTAGAGCGCGTAAAGCTGCAAGTTTTGCATTGTTTGGTGACTGCGGTAAGCCAAAGAAAAGGGAGCGGAGAAGATAA 3747 0.4428 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNMDSGSRRFSTNSQLANNDKNKDKDKEKKVFLYNWKNYKSSSEKYNEEEEEEEEEEEEEDDGGGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAAAGTHSSIFRCGDANLVSRRTVPVKKKSKKSSPHFDFLAKYQHRSGRNFVTSSKALPFFSRDDSVEHEHSDDDDDDDDDTEDYTNSEGVRVRPLSGSSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYTYSTPALSTSSYNRYAHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSVSASHKRRLPLRSARGVIPLLTNSGDVREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENSRSFSQKYRPMFFGELIGQNIVVQSLVNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDENKPCGYCRECADFMSGKSTDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFVTSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADSLDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRMNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSSTHKSDPQYMSRKSAYTASQQKALNDNSNHQKDISSKIDGFSLKSKPSNSPVLDDGSTVVSSDDLMVGNTVYRCIDSGKLCDIWVHCIGRCHSKTLKQLLHNHGKLVSVCEAEGVLVAYVAFGDADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLPDGEGGKQVNLLGLKQAESTVASEKELRQRHMKGTESYSSLPPVLDGNLQSTTASSDILAEGNGVRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMDSTRFSSHQEWEDDPTNEVKVLSLINGRVPQKDQISRKADRCPMSPSLLHDNSLATISGKDNPGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRARKAASFALFGDCGKPKKRERRR 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7758g00003 1248 CDD HLD_clamp_pol_III_gamma_tau 639 702 IPR045085 -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 202 238 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 87 134 - -
Mupr7758g00003 1248 SMART AAA_5 496 646 IPR003593 GO:0016887
Mupr7758g00003 1248 Pfam DNA polymerase III, delta subunit 479 639 - -
Mupr7758g00003 1248 Gene3D - 641 702 - -
Mupr7758g00003 1248 SUPERFAMILY post-AAA+ oligomerization domain-like 710 810 IPR008921 GO:0003677|GO:0006260
Mupr7758g00003 1248 CDD AAA 478 636 - -
Mupr7758g00003 1248 FunFam DNA polymerase III subunit gamma/tau 460 638 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 29 64 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 394 416 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 815 829 - -
Mupr7758g00003 1248 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 466 880 - -
Mupr7758g00003 1248 NCBIfam DNA polymerase III subunit gamma/tau 464 812 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 840 880 - -
Mupr7758g00003 1248 FunFam DNA polymerase III subunit gamma/tau 640 702 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 93 111 - -
Mupr7758g00003 1248 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 686 IPR027417 -
Mupr7758g00003 1248 Pfam DNA polymerase III subunits gamma and tau domain III 693 759 IPR022754 GO:0003887
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 397 414 - -
Mupr7758g00003 1248 Gene3D - 456 637 IPR027417 -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 22 72 - -
Mupr7758g00003 1248 Coils Coil 774 801 - -
Mupr7758g00003 1248 Coils Coil 85 106 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 112 129 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 209 224 - -
Mupr7758g00003 1248 MobiDBLite consensus disorder prediction 815 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7758g00003 Mupr-Chr7758 20694 27288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7758g00003 460 754 Core DNA Replication Machinery Family AT1G21690 24.342 1.36e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7758g00003 - - gmx:100814391 2097.4