Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7685g00003 ATGCATAATAAGGACGCTTGCTCCCCCTCCTCGAACGGCAGATTTGGCGCCACCGCCTCCGGTCAAATGCCGTCACCCGGCGGCGTCTATGGTTCGCTGTACTCGGCTCTGTCGAATGAGAACATTCCGTCGCTCTCCGCGAACTGCAGCAACGGTGGCGGCGTCTCGCTGTATCCGTACTCCGAGCCAACTCAGTACGACTCGTGCGTGATTCAGAAGCACCAGGACATGGTGAACCGTCACAGCATGTGCCTGAGTCGTCTGGTGGAAACTTCCAAAGAGGTGGAGGCTCTGAAGCAAGAGAACGGCCAGCTCCGCGCGGCGAACAAGGAGCTGCAGAAGCAGTTGCACCTCGTCATCCAGGCCTCGCTGGAGAACCAGTACGGTGGCTCCTCCGGTCAGCCGCAAGCGACGCTGTTCGATGTCGTGCATGGGTTCCGCGGCCTCCACGTTGGCGAGGGGAAAGAGAACTGCGCCGATTGGAATAACAACAATAATCATAATCATAACAATATTATCAATAATAATAATAACAATAAGGAGCTGCAGGAAATTTCGGACGAGAGTCCAACGAGCGTGATTGAGAATAACGTGGTGGAAGTGGAGAGGTTCTCGCTCCCCAAGAGCATATCTGTGAGGTCCAATGGTTACTTGAAGATAGCTCAGTCTCAGTCTGCGGCTCTTGCCACCAATAATAATGCCTCTCGCAACAGAGGTGCCACTCGCCCACGCACCTCCTCCACTCCACCTGAAGCAGTTCAGAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGATAGTGTATAACCAAGGAATGTTCAAGACTGAGCTGTGTAATAAGTGGCAGGAAACTGGTACATGCCCATATGGAGATCACTGCCAATTTGCTCACGGTATTGGGGAGCTACGCCCAGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGGGTTGTGTGCCCGTATGGCCATAGATGCCATTTCCGCCATGCACTTACCGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGAACAATGAAGCTGGAAAGATAA 1089 0.5317 MHNKDACSPSSNGRFGATASGQMPSPGGVYGSLYSALSNENIPSLSANCSNGGGVSLYPYSEPTQYDSCVIQKHQDMVNRHSMCLSRLVETSKEVEALKQENGQLRAANKELQKQLHLVIQASLENQYGGSSGQPQATLFDVVHGFRGLHVGEGKENCADWNNNNNHNHNNIINNNNNNKELQEISDESPTSVIENNVVEVERFSLPKSISVRSNGYLKIAQSQSAALATNNNASRNRGATRPRTSSTPPEAVQKVYVRGGQKEEEPLEMIVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRTMKLER 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7685g00003 362 SUPERFAMILY CCCH zinc finger 274 309 IPR036855 GO:0046872
Mupr7685g00003 362 ProSiteProfiles Zinc finger C3H1-type profile. 277 305 IPR000571 GO:0046872
Mupr7685g00003 362 MobiDBLite consensus disorder prediction 227 251 - -
Mupr7685g00003 362 FunFam zinc finger CCCH domain-containing protein 15-like 272 310 - -
Mupr7685g00003 362 MobiDBLite consensus disorder prediction 1 22 - -
Mupr7685g00003 362 SUPERFAMILY CCCH zinc finger 311 345 IPR036855 GO:0046872
Mupr7685g00003 362 PANTHER CCCH ZINC FINGER/TIS11-RELATED 74 349 IPR045877 GO:0003729
Mupr7685g00003 362 MobiDBLite consensus disorder prediction 1 19 - -
Mupr7685g00003 362 Coils Coil 88 118 - -
Mupr7685g00003 362 SMART c3hfinal6 315 342 IPR000571 GO:0046872
Mupr7685g00003 362 SMART c3hfinal6 277 304 IPR000571 GO:0046872
Mupr7685g00003 362 Gene3D - 272 310 - -
Mupr7685g00003 362 Gene3D - 311 347 - -
Mupr7685g00003 362 ProSiteProfiles Zinc finger C3H1-type profile. 315 343 IPR000571 GO:0046872
Mupr7685g00003 362 CDD bZIP 79 117 - -
Mupr7685g00003 362 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Mupr7685g00003 362 FunFam Zinc finger protein 36, C3H1 type-like 1 311 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7685g00003 Mupr-Chr7685 19527 21699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7685g00003 70 357 C3H Transcription Factor Family AT1G68200 50.676 2.43e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr7685g00003 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7685g00003 K18753 - gmx:100796550 583.948