Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7543g00001 ATGGTTGTATGGCGGTGGCGCGAAGCGGGAAGCGAAATTAAAGCGCGAAAGAGGGTTTTGTTTATAGTTGGCATCACAGCACCTCACAGTGGACACATTTCTGCATCCATGGCTTCTTCACTGCGTCGAAGGAGAACCCAGGCTCCCAAATCATCCCCCACCTTAAACGACGACGTCTGCTGCGAGGAATGCGGGTCCGGTCACTCTCCTGCTAAGTTGCTTCTTTGCGACAAATGCGACCGCGGCTACCACCTCTTCTGCCTCCGTCCCATTCTTCCTTCTGTCCCCATTGGTTCTTGGTTCTGCCCCTCTTGCTCCCACAACAAGCCCCACTCTTTCCCCCTTGTCCAGACCAAAATCATTGACTTCTTTCGAATTCAACGCTCCCCCGACATATCGTTAAATCAAGAGACGCGGAAGAAGCGAAAGCGGGGTGGCAGCTTAGTGGTGTCGAAGAAGAAACGGAAACTGTTGGCGTTCACGCCGAGTGAGGATCCCAAGAGGAGGTTGGAGCAGATGGCGTCTTTGGCAACGGCGTTGACTGCAACGAAAACGGAATTCAGCAATCACCTTACTTACATGCCTGGAATGGCACCAAGGTCCGCTAATTGCCCTGCTCTCGAGCGTGGTGGAATGCAGGTCATGTCAAAAGAAGATACTGAGACCTTAAACCTGTGTAAAAATATGATAGAAAGAGGAGAATGGCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTAGAAGCAGATAGATCCATCAAAGACTTAACTATAATAACAGAATATGTTGGAGATGTAGACTTTTTAAAGAACAGGGAAAATGATGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCACGTACGCTTGTTATCTGTCCAGACAAACGTAGCAACATAGCACGTTTCATTAATGGCATCAATAATCACACACAGGAAGGGAAAAAGAAGCAGAACTTAAAATGCGTGAGGTTTGACGTTGGAGGTGAATGTCGGGTTCTTTTAATTGCCAATAGAGATATTACAAAGGGGGAAAGACTGTACTATGACTACAATGGAGATGAACATGAATATCCAACTGAACATTTTATAAAACATATCAGTTATGATTTTATTGTATATGCAATGATCGATGCATATTTTTAG 1164 0.4562 MVVWRWREAGSEIKARKRVLFIVGITAPHSGHISASMASSLRRRRTQAPKSSPTLNDDVCCEECGSGHSPAKLLLCDKCDRGYHLFCLRPILPSVPIGSWFCPSCSHNKPHSFPLVQTKIIDFFRIQRSPDISLNQETRKKRKRGGSLVVSKKKRKLLAFTPSEDPKRRLEQMASLATALTATKTEFSNHLTYMPGMAPRSANCPALERGGMQVMSKEDTETLNLCKNMIERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSRTLVICPDKRSNIARFINGINNHTQEGKKKQNLKCVRFDVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFIKHISYDFIVYAMIDAYF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7543g00001 387 CDD PHD_RSF1 61 105 - -
Mupr7543g00001 387 SUPERFAMILY SET domain 226 361 IPR046341 -
Mupr7543g00001 387 SUPERFAMILY FYVE/PHD zinc finger 51 110 IPR011011 -
Mupr7543g00001 387 CDD SET_ATXR5_6-like 233 370 - -
Mupr7543g00001 387 ProSitePatterns Zinc finger PHD-type signature. 61 105 IPR019786 -
Mupr7543g00001 387 Pfam PHD-finger 61 107 IPR019787 -
Mupr7543g00001 387 ProSiteProfiles Zinc finger PHD-type profile. 58 108 IPR019787 -
Mupr7543g00001 387 Gene3D SET domain 142 370 IPR046341 -
Mupr7543g00001 387 ProSiteProfiles SET domain profile. 236 358 IPR001214 GO:0005515
Mupr7543g00001 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 114 IPR013083 -
Mupr7543g00001 387 SMART PHD_3 60 106 IPR001965 -
Mupr7543g00001 387 FunFam Histone-lysine N-methyltransferase ATXR5 141 370 - -
Mupr7543g00001 387 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 135 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7543g00001 Mupr-Chr7543 2282 5506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7543g00001 48 121 C2H2 Transcription Factor Family AT3G01460 32.468 1.46e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr7543g00001 PHD 2.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7543g00001 K24406 - gmx:100775247 612.453