Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7477g00001 ATGTCTCCGCCAGTGCTGGGCATAGGGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGGTTCTTCAACCACCATGGAAAGTGTGTGTCTCAAGAGCTTAGAATTAAAAGAGCGCAACTACATGGGATTGTCTGATTGTTCTTCTGTGGACAGCTCAGTTCCGTCCTTCTCCGAAGAGAGTAAAAGTAATCTGAACCTGAAAGCCACTGAACTCAGACTCGGGCTTCCAGGATCACAGTCTCCTGAAAGAGATTCTGATCTTTGCTTAAGAAGCTCAGCTCAATTTGATGAAAAACCTTTGTTTCCTTTGCGTCCTTTGACCGATGATCATCATTCTTCAGCCAAGACTGCTGTTTTGGGAAACAAAAGAGGGTTCTCAGATGCCATGAATGGCTTCTCAGAGGGGAAATTCCTTGTTAATTCGGAGGCCAATCCTATACTGTCTCCCAGGCCTTCCTCTAACATGGGATTAAAACCTGGTCCCACGCTTGAGAATGTTGGGACTCAACAAACCAATATGAAAGAAGTAGCAACAACAAAGGTGGGGCTTGATAGGCCTCATGCTGCCAATGAAACCAGACCAAGTCTGGTTGATTCTGCAAATAATAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAAATTTCATTGGCAACTAATTCAAAGAACAATGAAGAAGTTGATGGTAAAGTGGGAGTTGGTGTACTGTTCATCAAGGTCAGTATGGATGGTGCTCCCTATTTGAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGCTTTACTATAAGTCAATGTGGATCTCATGGAATTCTGGGCAGGGAGATGCTGAATGAAACCAAGCTGAAGGATCTTCTTCATGGATCAGAATATGTTCTTACATACGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTACTGAAACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAATGTAAGAGCAGGAACTAG 1098 0.4399 MSPPVLGIGEEGKSNVTLLGSSTTMESVCLKSLELKERNYMGLSDCSSVDSSVPSFSEESKSNLNLKATELRLGLPGSQSPERDSDLCLRSSAQFDEKPLFPLRPLTDDHHSSAKTAVLGNKRGFSDAMNGFSEGKFLVNSEANPILSPRPSSNMGLKPGPTLENVGTQQTNMKEVATTKVGLDRPHAANETRPSLVDSANNNNSAPATKAQVVGWPPIRSFRKISLATNSKNNEEVDGKVGVGVLFIKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISQCGSHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTETCKRLRIMKSSDAIGLAPRAVEKCKSRN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7477g00001 365 ProSiteProfiles PB1 domain profile. 245 347 IPR000270 GO:0005515
Mupr7477g00001 365 MobiDBLite consensus disorder prediction 192 211 - -
Mupr7477g00001 365 MobiDBLite consensus disorder prediction 194 210 - -
Mupr7477g00001 365 Pfam AUX/IAA family 69 356 IPR033389 -
Mupr7477g00001 365 SUPERFAMILY CAD & PB1 domains 246 346 - -
Mupr7477g00001 365 FunFam Auxin-responsive protein 240 357 - -
Mupr7477g00001 365 Gene3D - 241 359 - -
Mupr7477g00001 365 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 64 352 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7477g00001 Mupr-Chr7477 24847 28961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7477g00001 248 350 B3 DNA Binding Superfamily AT2G46530 34.951 3.89e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mupr7477g00001 AUX_IAA 4.4e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7477g00001 K14484 - gmx:100783314 595.119