Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7476g00005 GATAAAATTGTGTCAACAAATCTCTATGATATGGATCAAATGAGTCAACAAAGGCATGGCTATTTCCATTCTGAAAGTAACCATTTCCGAGGCAACAACGTTTCTCGGCCTAATGTCTGCACAGTGCTCGCAGCTTCAGGGAATGCAGCTAATCTAGATTCCCATTATTTACTAGATGCATATGACAATGGTATGATGTATGGAATGACACAATACACCGGTATTCAACATCAACATAATCTTGATATGGGTGTTCCGAACATATATTATTCTGGCGTGAATCCTTCAACTAGTACTGCTGTGTCTCTAAATAACAGACCCTCTGGTCAGTCCACATTTGCAGTCAATGGAACATATAAGTGGAAAAATGCTGAAGGGATGAGAAGAAACTATCAACATTTCAATGCTTCATCTAGTACTTCAGTTGCTCCCCCTAATGCAAGACACGCTGAAAATGGCATCCCCTCGCTACCACATTGTAGTTCGTGGGGAAGATCAGGAGAGTCTGTGATGGTGCATGACCATAACCACTTGATTCGAGGAAACTATTTAGGTCAGCACTTTCAACCAGCTGCTCCTCCCTGGCCAGACCAACACTTGAATACCAGTAATAACGATGCTCATGCTTTGGCTTGGCATCAGTCTCTTCCAATGCCCTATGTACAAGCTCCCAGTGCTAATGGAAGTTCATTAGAGAATGCAAGAATGGGTCTACAGAGATATCATGATACAGCTGGAAGCAGAAGTGGCCTCAGATTTCCCCATCCTCCTCCTGTCAACCCACAGTATCATGGCTTTCACCATCAAACTCAGCCTGTGCAAGAGATGAGAGGTCACTCCATCAACCTCCACCCTCCAGTAACTGCACCTTCATATAGAGTTCCAACAAATCCTTCGCGCAGTTCTTCAATCCTTGTACAAAATGCTTTTGAGATGGGTGGTGCTAGGCATGTTGCCCCTCCACCATTTGCAGGTGCACGTATATACCGACCTCATAGAGGCAACATGCACGAGACATCTCTTAGACATCGAAATCTTCCTCCCGTGGCCTTTCTCCAAGTTGATGATGTTGCTTTACTGGATGACCATCATAGTGATATGCGCTTGGACATTGAGGATATGTCATATGAGGCAAGTGACCGGATTGGCAATGTAAACACGGGTTTGTCAGAGGAAAAGATTACAAGTCAAATGAAGACAAGAACTTATTTACTACCTACTAATGCTATTAACATGGAGGAGAAAGCTTCTGAGGAACACGAAACTGATTCTTGCATTATATGCCAGGATGAATACAAGAACCAAGAGAAGATTGGAATTCTTCAATGCGGGCACGAGTATCACGCAGATTGTTTAAGGAAATGGTTACTTGTGAAAAATGTCTGTCCCATATGCAAATCACAAGCATTGACTCTTGGAGAAAAGTGTGTATAA 1434 0.4303 DKIVSTNLYDMDQMSQQRHGYFHSESNHFRGNNVSRPNVCTVLAASGNAANLDSHYLLDAYDNGMMYGMTQYTGIQHQHNLDMGVPNIYYSGVNPSTSTAVSLNNRPSGQSTFAVNGTYKWKNAEGMRRNYQHFNASSSTSVAPPNARHAENGIPSLPHCSSWGRSGESVMVHDHNHLIRGNYLGQHFQPAAPPWPDQHLNTSNNDAHALAWHQSLPMPYVQAPSANGSSLENARMGLQRYHDTAGSRSGLRFPHPPPVNPQYHGFHHQTQPVQEMRGHSINLHPPVTAPSYRVPTNPSRSSSILVQNAFEMGGARHVAPPPFAGARIYRPHRGNMHETSLRHRNLPPVAFLQVDDVALLDDHHSDMRLDIEDMSYEASDRIGNVNTGLSEEKITSQMKTRTYLLPTNAINMEEKASEEHETDSCIICQDEYKNQEKIGILQCGHEYHADCLRKWLLVKNVCPICKSQALTLGEKCV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7476g00005 477 SMART ring_2 425 465 IPR001841 -
Mupr7476g00005 477 SUPERFAMILY RING/U-box 417 469 - -
Mupr7476g00005 477 FunFam E3 ubiquitin ligase BIG BROTHER 385 470 - -
Mupr7476g00005 477 ProSiteProfiles Zinc finger RING-type profile. 425 466 IPR001841 -
Mupr7476g00005 477 CDD RING-H2_RNF24-like 423 469 - -
Mupr7476g00005 477 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 96 470 IPR045191 GO:0061630
Mupr7476g00005 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 470 IPR013083 -
Mupr7476g00005 477 Pfam Ring finger domain 423 466 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7476g00005 Mupr-Chr7476 23630 27065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7476g00005 352 470 C3H Transcription Factor Family AT2G15530 40.000 9.19e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7476g00005 K19041 - gmx:100779069 753.051