Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7440g00001 ATGACAATGGAAGAAGAGTCCTTGGCAGCAGTTCCATTTGACAGAGCTCTTGAACAGGCAATTGTATCTATCAAGAAAGGTGCATATTTACTTAAGTGTGGTCGGAGAGGAAAGCCGAAACTTTGTCCTTTCAGACTCTCTCAGGATGAGAGAAATTTGATTTGGTACTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTGCAGTTACAAAAATTGTTCAAGGGCAGGGAAATATAAGGTCTCAAAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAATGGCGAACGTTCTCTTGATCTGATATGCAAGGACAAAGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCTAGGTGTCAACATCCTAGAGCTTTTAGCAGTTTAAGAAGTTGCAAAGGGGTGCAGAGTTGTGTCAGTAGTCCTGCTGGAATCTTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGATACCTCTCAATTTACTCAGGTACATAGTGTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGTACATCTGATAACTTTTATTCATCGGCATCTTTCATCTCCAGCTCTCATGGCATAACAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCAAATATTCATAGCAACATTGAGTCAACACGTGTCGATAAGGAGCGCAAGAAGAATTTGTCCTACAGGTCTCTGATGCATCCTACCTCCCCACATGTAGGAAAAAACAATGTATTGAAGGATGTAATGATATGGGGTGGAGGGATTGGATCTCTTGTAGGGATTGTGAATGAAAGATTTGTCCAACCTGGAATTTATTCCTTAGTGCCAAAGTTACTAGAATCTACTGCCATGTTGGATGTACACAACATAGCCTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAGAAAATTGATATGGATATTAGCTCACCCAAAATAGTTGATTCTCTTAATGGTATTCATGTAAAACATGTTGCATGTGGTGAGTATCATACATGTGCTTTGACAGATTCCGGTGAGGTATATACTTGGGGGAATGATGTTTGTTGTGCAGATTTGTTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCACAAAAACTTGGAGGACCCTTAGATGGGATTAGTATCTCAAGTGTTGCTTGTGGGGAATGGCATACTGCAATTGTCTCTAGCTGTGGGAGGTTGTTTACATATGGAGATGGTACATTTGGGGTTCTTGGCCATGGTGATCTTCGAAGCTGTTCTAGTCCAAAAGAAGTTGAATCTCTTAGTGGTCTAAGAGTGAGATCTGTTGCTTGTGGATCATGGCACACAGCTGCTATTGTTGAAGTCATGTTTGACCGGTTTCGGTACAACAGTGCTAGTGGCAAGCTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGACAATGGAAGCAAGCTTGTGCCAACATGTGTTACACAACTTGTTGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTCACCAACATGGGCAAGGTTTTTGCTATGGGAAGTGCCAAGTTTGGACAGCTAGGGAATCCACATGCCAGGGATAAAGCAGTGATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTGATATCATCTGGTTCATATCATGTTGCTGTTTTGACTTCTTCAGGGAGTGTGTACACATGGGGCAAAGGTGAAAATGGCCAACTGGGGCTAGGTGACACTGAAGACAGACACACACCTTGTTTTGTTGAGGCTCTAAAAGACAGGAAGGTAGATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAGCCTATTTCTATTAGTGATCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTCTTTTGTTCTGCCGCGCTTGTAGTAGTAAGAAGATTATAAATGCACCTCTAGCCCCTAGCAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGCTTCGATAAACGGCAAGGAGGTGCACATTCTGTGATGGCATCAAAATCTAGAAATTACAACACTCAGCAGATGCTGAAGCATCAGCACAAAATTTCTGAAGTGACTGAAGATAGGGGAGAGACAACTGTGACACAAGGTCCTTTGTTGTCCCTTGGTCAATCATGTTACAGGAAAAGCATGCCTAGTGGAAGAAAGGATTGGAAAAACCAACAAGAAAGCCAGCAGGATGTGGAAGATAGTTCTTCTATGCTAGGTGGAATGCCACAGTGGGGGCAAGTTCCATGCCCTGCCATGTTTAAGATCAATTATACAGAAAATTCAGTTGTGCATGTTTCTTCATCCAAAAATAAATTAGCCACAGTTTCTCCCCTTAATGTGGAATCTACTACAGCATATAACTTTGCCAATGCAGAGACTGATACAACAAAGTCTGACAAGGTGCTCCTTGAAGAAGTTCAGAGGCTTAGAGCTGAGGCTAGGAGACTTGAAGAGCAGTGTGAGCTCAAGAACCATAAAATACAAGAGTGTCAGCAAAAAATTGAGGAGAGTTGGTTTGTGGCAAGGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATATCAGGAAAAGATCATGCTATACAAGAAGGAAAAGTTGGGCAGCATGAATTTGTGCCTAATGTAGCACCCATACACACAGATATGAAGAGTCCAAGAGATTGCAACGTGGACAGTTTATCCAATTCCCCTATAGTATTCTCTGACACATTAAAGTCCAAATTTGGGAGAAGTATGTTCCCCAAAAATGATAAATTAACGGAGAATTCTAACTTAAATAGATCAGAATCTCAACAAGACACCACTGAAGGCTTGAAGGTTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTCACAACCTTGCCATGTGGGAAAAAGGGTCTGAAGCGAGTGAGATTTAGCCGGAAGAGATTCTCAGAGAAGGAAGCTGAAAAATGGTGGGAAGAGAATCAAGGCACAGTGTATCACAAGTATGGGATTGAAGGATATATAAACACTAGCCAAAGTCAG 3216 0.421 MTMEEESLAAVPFDRALEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSAVTKIVQGQGNIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSCTSDNFYSSASFISSSHGITDNSVPSSPYIDPNIHSNIESTRVDKERKKNLSYRSLMHPTSPHVGKNNVLKDVMIWGGGIGSLVGIVNERFVQPGIYSLVPKLLESTAMLDVHNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGIHVKHVACGEYHTCALTDSGEVYTWGNDVCCADLFNEGRTRSQWIPQKLGGPLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSCSSPKEVESLSGLRVRSVACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHADNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKFGQLGNPHARDKAVMVEGQLKQEFVKVISSGSYHVAVLTSSGSVYTWGKGENGQLGLGDTEDRHTPCFVEALKDRKVDTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFDKRQGGAHSVMASKSRNYNTQQMLKHQHKISEVTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNQQESQQDVEDSSSMLGGMPQWGQVPCPAMFKINYTENSVVHVSSSKNKLATVSPLNVESTTAYNFANAETDTTKSDKVLLEEVQRLRAEARRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDHAIQEGKVGQHEFVPNVAPIHTDMKSPRDCNVDSLSNSPIVFSDTLKSKFGRSMFPKNDKLTENSNLNRSESQQDTTEGLKVEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKRFSEKEAEKWWEENQGTVYHKYGIEGYINTSQSQ 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7440g00001 1072 MobiDBLite consensus disorder prediction 768 791 - -
Mupr7440g00001 1072 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 916 - -
Mupr7440g00001 1072 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Mupr7440g00001 1072 SMART fyve_4 646 715 IPR000306 GO:0046872
Mupr7440g00001 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Mupr7440g00001 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Mupr7440g00001 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Mupr7440g00001 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 595 644 IPR000408 -
Mupr7440g00001 1072 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Mupr7440g00001 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Mupr7440g00001 1072 Coils Coil 854 888 - -
Mupr7440g00001 1072 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1060 IPR013591 -
Mupr7440g00001 1072 SUPERFAMILY FYVE/PHD zinc finger 653 728 IPR011011 -
Mupr7440g00001 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Mupr7440g00001 1072 MobiDBLite consensus disorder prediction 982 1002 - -
Mupr7440g00001 1072 Pfam Pleckstrin homology domain 18 124 IPR001849 -
Mupr7440g00001 1072 SUPERFAMILY RCC1/BLIP-II 265 648 IPR009091 -
Mupr7440g00001 1072 Gene3D - 391 484 IPR009091 -
Mupr7440g00001 1072 Gene3D - 485 653 IPR009091 -
Mupr7440g00001 1072 Gene3D - 251 390 IPR009091 -
Mupr7440g00001 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Mupr7440g00001 1072 CDD PH_PLC_plant-like 15 127 - -
Mupr7440g00001 1072 Gene3D - 16 133 IPR011993 -
Mupr7440g00001 1072 SUPERFAMILY PH domain-like 17 126 - -
Mupr7440g00001 1072 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 724 IPR013083 -
Mupr7440g00001 1072 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
Mupr7440g00001 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Mupr7440g00001 1072 MobiDBLite consensus disorder prediction 979 1002 - -
Mupr7440g00001 1072 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Mupr7440g00001 1072 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Mupr7440g00001 1072 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Mupr7440g00001 1072 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Mupr7440g00001 1072 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Mupr7440g00001 1072 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Mupr7440g00001 1072 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Mupr7440g00001 1072 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Mupr7440g00001 1072 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Mupr7440g00001 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Mupr7440g00001 1072 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7440g00001 Mupr-Chr7440 3300 10416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7440g00001 1007 1065 Major Intrinsic Protein MIP AT1G31880 45.763 3.01e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7440g00001 - - gmx:100797223 1963.73