Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7436g00006 ATGTATGAGGCCAAGGTGGAGGAACATAATGTTATTGGGCTAGCCCGATATCACTGTACAAGACGAAGCCCAAATGTGCACGAGTCCATCACACAACTAGCTCTTAGGACAGTAATGCGAGTGCATTTTTCCCTCACAAACGCGAATTGTGGTGGAGAAGCCACTAGCTGGCAAACATACGGTGCCTTAAGATATTGCCATTTTGGATCAGAAGGGGGTAAAAATCTTGGATCAGAAGGGGGTAAAAATCCGAAATTGAAACCAAACGAGAAGCCAAACAGGGTGGGGCTTTTTTGGGATTTGGATAATAAACCTCCCAACTCAATTCCACCTTATGAAGTTGCCAATAAGCTTAGAGTGGCTGCATCTTCCTTTGGGGTTGTTCGTTATATGGTGGCTTATGCAAATAGCCACACTTTTAGCCATGTCCCTCAATGTGTAAGGGAGAAAAGGAAAGAGAGGGAACTGCTGCATCGCTTAGAGAATAAGGGTGTCATCAAGCCAAATCAACCTTATCGTTGTCGCGTTTGTGGGAGAAAGTTTCATACCAATGAAAAGCTTGTTAACCATTTCAAGCAACTGCATGAGCGCGAGCACGAGAAAAGGATGAAACAGATAGAGTCTGCTAGGGGGAGCAGGAGGGTGAATTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACTCCCAAAGTGGGGTATGGTTTGGCGGATGAGCTCAAACAAGCCGGGTTTTGGGTTCAAACTGTTTTGGATAAGCCACAAGCTGCGGATCGAGCATTGCGAAGCCACATGGTGGATATCATGGATCATAGGCGGGTTGAGTGTGTGGTCCTTGTGTCTGATGATACTGATTTTGTTGATGTGATAAAGGAAGCAAAGCTGCGGTGTTTGAAGACGGTTGTCATTGGGGATATCGATGAGGGTGTCTTGAAGAGGACTGCAGATGCTTCGTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAACAGGCTGTTTCCGTTGTGAAAAATTGGAAGGATCGTGATATCTTAAAGAGGTTAGAGTGGACATATAACCCAGATGTGGATGAAAAGAAAATCAATCTGGATGATACTGTTACAGAGGCATCTGAAGATGATGATATTGAAGATATCTGTGATGAAGTTGATGATGACTATAAGGATGACAGAGGTTCTTGGTGGGAATTAGATTCTGACAATGATGTCACAAATGGACAACCAGGCAAATTATCTGATTTATCTGTGAAGAGAGAAAGTGAAATAACAATGAAGACAAAAGTTGACTTCTAA 1320 0.4311 MYEAKVEEHNVIGLARYHCTRRSPNVHESITQLALRTVMRVHFSLTNANCGGEATSWQTYGALRYCHFGSEGGKNLGSEGGKNPKLKPNEKPNRVGLFWDLDNKPPNSIPPYEVANKLRVAASSFGVVRYMVAYANSHTFSHVPQCVREKRKERELLHRLENKGVIKPNQPYRCRVCGRKFHTNEKLVNHFKQLHEREHEKRMKQIESARGSRRVNLVAKYSMKMEKYKKAASAILTPKVGYGLADELKQAGFWVQTVLDKPQAADRALRSHMVDIMDHRRVECVVLVSDDTDFVDVIKEAKLRCLKTVVIGDIDEGVLKRTADASFSWEEILMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDVDEKKINLDDTVTEASEDDDIEDICDEVDDDYKDDRGSWWELDSDNDVTNGQPGKLSDLSVKRESEITMKTKVDF 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7436g00006 439 ProSitePatterns Zinc finger C2H2 type domain signature. 174 195 IPR013087 -
Mupr7436g00006 439 CDD PIN_LabA-like 183 313 - -
Mupr7436g00006 439 Gene3D Classic Zinc Finger 148 234 - -
Mupr7436g00006 439 Pfam NYN domain 244 324 IPR021139 GO:0004540
Mupr7436g00006 439 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 87 412 - -
Mupr7436g00006 439 SUPERFAMILY beta-beta-alpha zinc fingers 168 198 IPR036236 -
Mupr7436g00006 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 172 200 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7436g00006 Mupr-Chr7436 38163 41226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7436g00006 89 416 C2H2 Transcription Factor Family AT4G12240 58.407 1.28e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr7436g00006 NYN 2.7e-06 CL0280