Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr72g00004 ATGCAGCCTCGCCGGAGAAGGTATGTTCGAGCTTCGTCGGAGACAGAGAGGGAATCTAAGCATTTTCTGAAGATCATACTTCCCTCAGCCATTCACGCCAACCAGTTGTGGTCACTGCAGAGAATTCCCGAGGAATTTATAAAAAGATTTGGAGATGAACTATCAAGTGTTGCTACAATTACTGTTCCCGATGGTTGTGTTTGGAAAATGAGATTGAAGAGATGTGGTAAACATGTTTTGTTCTGCAGCAAATGGCGACAGTTTGTAAAATACTATTCTCTCAGTTATGGTTCCCACCTAGTTTTCAGATATGAAGGGAATTCAAAGTTTCGTGTTCTTATATTTGACATTACTTCTACCGAGATTTGTTATCCATGCAAAACTCGGGGCACTAGTGGCACTAGTGGGGTAGAAATTATTAATGAAGATGATGTGAATTTAAAAAGTGAGAGCAAACCAAGGAAGAAAGAAAGTTGTTCTTCTCATGGGAAACTAGTCAAAAGTGGATGTAGTGAAAACCGCTCTTGTTCGGAAATAGCAAAGGAAGCTGCCAATAGATTCAAGCCAAAAAACCCTTTTGTTACTTGTACTATCAGGCTTGATCGGTTGTATGTGGGAAGTTATTTTTCTGCCAAGTATCTGAAGCCAAATGTTGATATGAAGCTCCAAAATTGTGATGGGGAGAAATGGGATGTTTCTTGCACATGTCATGGTCCGCGCAACAAAGCAATGGTAATAGCAAAGGGATGGAGTAAATTTGTAAGGGACAACGATCTATCAGAGGGAGATGCTTGTGTGTTGGAGTTGATCAAGAGGGACCCGGGTGTGCTCAAACTTACCGTGCTTCGTGCGCCTCAACATCACAATTCACCTCTGCACACAGAAGAGGATAGACGTTCAAATATAGCACTAGTTCAAAAATGGACTTGTACACAACGAAGGAGACAAAAATGGGTGGTCACCTGTGCCCTTGTTTGTTCAAAACGGGCAAACGCCACAGTTGCTTCCTCGTATACGAATATGCTAAAACCCCGGACACCACCATGTGACTCCGTTGAACTGTCCAAGATCTGTCTGGATACACCACTACCACGCATGCATCTCAGCTCCCGCAACAGAAATGCAGTGCAATATTATGCTAATGCTAGTGGTGACCCAATCAACTAA 1167 0.4267 MQPRRRRYVRASSETERESKHFLKIILPSAIHANQLWSLQRIPEEFIKRFGDELSSVATITVPDGCVWKMRLKRCGKHVLFCSKWRQFVKYYSLSYGSHLVFRYEGNSKFRVLIFDITSTEICYPCKTRGTSGTSGVEIINEDDVNLKSESKPRKKESCSSHGKLVKSGCSENRSCSEIAKEAANRFKPKNPFVTCTIRLDRLYVGSYFSAKYLKPNVDMKLQNCDGEKWDVSCTCHGPRNKAMVIAKGWSKFVRDNDLSEGDACVLELIKRDPGVLKLTVLRAPQHHNSPLHTEEDRRSNIALVQKWTCTQRRRQKWVVTCALVCSKRANATVASSYTNMLKPRTPPCDSVELSKICLDTPLPRMHLSSRNRNAVQYYANASGDPIN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr72g00004 388 ProSiteProfiles B3 DNA-binding domain profile. 220 285 IPR003340 GO:0003677
Mupr72g00004 388 CDD B3_DNA 197 283 IPR003340 GO:0003677
Mupr72g00004 388 SMART B3_2 22 118 IPR003340 GO:0003677
Mupr72g00004 388 SMART B3_2 193 285 IPR003340 GO:0003677
Mupr72g00004 388 PANTHER B3 DOMAIN-CONTAINING 13 272 - -
Mupr72g00004 388 CDD B3_DNA 20 116 IPR003340 GO:0003677
Mupr72g00004 388 ProSiteProfiles B3 DNA-binding domain profile. 42 118 IPR003340 GO:0003677
Mupr72g00004 388 SUPERFAMILY DNA-binding pseudobarrel domain 189 283 IPR015300 -
Mupr72g00004 388 Gene3D - 13 119 IPR015300 -
Mupr72g00004 388 Gene3D - 174 286 IPR015300 -
Mupr72g00004 388 Pfam B3 DNA binding domain 199 284 IPR003340 GO:0003677
Mupr72g00004 388 Pfam B3 DNA binding domain 37 116 IPR003340 GO:0003677
Mupr72g00004 388 SUPERFAMILY DNA-binding pseudobarrel domain 16 117 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr72g00004 Mupr-Chr72 53921 56702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr72g00004 141 283 B3 DNA Binding Superfamily AT3G18990 32.026 1.61e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr72g00004 B3 7.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr72g00004 - - vun:114183160 349.362