Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7292g00003 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCTGACCCTGTTGCTATTGATGCACCTGGAGGATTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATCGAGACCCAGTTAATTAAGGCTAGAGAGCAACAACAGCAGCAGCAGCAGCAACAACAACAACAGCCGCAACCTCAGCAGTCACAACATCAACAACAGCAGCAGCAGCATCAACAACAGTTGCAGATGCAACAACTGCTAATGCAGAGGGCTCAGCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAACCACCACAGCAGCAGCAACAGCAACCACAGCCACAACATCAGCAGCCACCACCACAGCAACAGCAGGGTAGGGATAGGGCTCATCTCTTAAATGGTGGTACGAACGGGTTAGTTGGAAACCCTAGCACCGCAAATGCACTTGCAACAAAGATGTACGAGGAAAGGTTAAAACTGCCTCTTCAAAGGGACTCTTTGGAAGATGCAGCGATGAAGCAAAGATTTGGAGACCAACTCTTGGATCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGGCAAGTGTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGTGGGTCCTGAAGGATCATTGATAGCAATGCCTGGTTCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGCTTGGAGCAACTGCGTTCTGGTCTACTCCAGCAACAAAAACCTCCTTTCATACAGTCTCCTCAGCCTTTTCATCAACTTCCAATGTTGACACCACAGCATCAGCAACAGCTAATTCTAGCACAACAAAATTTGGCATCGCCATCTGCCAGTGATGATACTAGAAGACTCAGAATGCTGCTTAACAATAGGAATATGGGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGCGATGTAGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGTCCTGCTTTTCCACGTGGTGATACAGATATGCTAATGAAGTTGAAACTGGCACAGTTACATCAACAACAGCAGAGTGTCAATCCACAACAGCAGCAACTGCAACAGCATACTCTTTCGAATCAGCAATCTCAGACTTCAAATCATAACATGCATCAGCCAGATAAAATAGGGGGAGGTGGTGGTAGTGTAAATGTGGATGGTAGCATGTCAAATTCCTTTAGAGGCAATGATCAGGTTTCTAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCAACTCCCTCAACTCATACACCTGGTGATGTGATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTGGCACTGATGGTGCCGGTACTCTGACATCACCTTCAAACCAGTTGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACAGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCACTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTTCGTTTTAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTGGACAATCCTGGGTATTCGCTTCGTACCTTTACAGGACATTCTTCATCTGTTATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCTTGTGATGTCGATGGCGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCGAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTTCCTTGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACACAAAAATGTCGATATTCACTAAAGGGACACACAAAATCAATACATTCTGTGTGTTGGGACCCTTCTGGGGAGTTTCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTGTTGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACGATGACTCTATCCGCTCATGAAGGTCTTATTGCTGCATTGGCGGTTTCTACTGTAAATAGTTTGGTTGCATCAGCCAGTCATGACAAGTTTGTGAAGCTCTGGAAAGATTACTAG 2670 0.4502 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQHQQQQQQHQQQLQMQQLLMQRAQQQQQQQQQQQQQQPPQQQQQQPQPQHQQPPPQQQQGRDRAHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAVGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQQLILAQQNLASPSASDDTRRLRMLLNNRNMGVTKDGLSNPVGDVVSNVGSPLQAGGPAFPRGDTDMLMKLKLAQLHQQQQSVNPQQQQLQQHTLSNQQSQTSNHNMHQPDKIGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFGTDGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEINSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLKQKATLEEHASLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRFLAAAAENVVSILDVETQKCRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLSLELWNMTENKTMTLSAHEGLIAALAVSTVNSLVASASHDKFVKLWKDY 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7292g00003 889 Gene3D - 740 888 IPR015943 GO:0005515
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 855 889 - -
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 651 686 - -
Mupr7292g00003 889 Coils Coil 112 142 - -
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 816 IPR001680 GO:0005515
Mupr7292g00003 889 CDD WD40 605 887 - -
Mupr7292g00003 889 SUPERFAMILY WD40 repeat-like 603 887 IPR036322 GO:0005515
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 686 IPR001680 GO:0005515
Mupr7292g00003 889 MobiDBLite consensus disorder prediction 135 185 - -
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 640 IPR001680 GO:0005515
Mupr7292g00003 889 MobiDBLite consensus disorder prediction 420 453 - -
Mupr7292g00003 889 MobiDBLite consensus disorder prediction 92 113 - -
Mupr7292g00003 889 SMART WD40_4 769 807 IPR001680 GO:0005515
Mupr7292g00003 889 SMART WD40_4 602 641 IPR001680 GO:0005515
Mupr7292g00003 889 SMART WD40_4 644 683 IPR001680 GO:0005515
Mupr7292g00003 889 SMART WD40_4 687 727 IPR001680 GO:0005515
Mupr7292g00003 889 SMART WD40_4 848 887 IPR001680 GO:0005515
Mupr7292g00003 889 SMART WD40_4 730 766 IPR001680 GO:0005515
Mupr7292g00003 889 MobiDBLite consensus disorder prediction 420 541 - -
Mupr7292g00003 889 SMART Lish 8 40 IPR006594 GO:0005515
Mupr7292g00003 889 ProSitePatterns Trp-Asp (WD) repeats signature. 670 684 IPR019775 -
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 855 889 IPR001680 GO:0005515
Mupr7292g00003 889 MobiDBLite consensus disorder prediction 465 524 - -
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 736 IPR001680 GO:0005515
Mupr7292g00003 889 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mupr7292g00003 889 Pfam LisH 10 36 IPR006594 GO:0005515
Mupr7292g00003 889 MobiDBLite consensus disorder prediction 135 153 - -
Mupr7292g00003 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 694 732 - -
Mupr7292g00003 889 Pfam WD domain, G-beta repeat 850 887 IPR001680 GO:0005515
Mupr7292g00003 889 Pfam WD domain, G-beta repeat 690 727 IPR001680 GO:0005515
Mupr7292g00003 889 Pfam WD domain, G-beta repeat 610 640 IPR001680 GO:0005515
Mupr7292g00003 889 Pfam WD domain, G-beta repeat 771 806 IPR001680 GO:0005515
Mupr7292g00003 889 Pfam WD domain, G-beta repeat 648 683 IPR001680 GO:0005515
Mupr7292g00003 889 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 887 - -
Mupr7292g00003 889 Gene3D - 587 739 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7292g00003 Mupr-Chr7292 13792 30784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7292g00003 688 886 Miscellaneous Gene Families AT5G08390 26.190 6.89e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mupr7292g00003 WD40 0.023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7292g00003 - - gmx:100779972 1295.41