Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7280g00001 ATGACGAAGATGACCCTTCGCACGTGTTTCGATAACGTTGAAATTCTCACGTGTGACGACGAGCGCATAATATTATATAACACGGGTTTTGATTTGAGTTTCGTTGTTCCAATGAGCGATCACTTGGTGCTGTTCGTTGACCGTCTCGCGTGCCCTGTCCCCGTTGACCCGGTGGCGCAGCCTGCGCAGCTCCCTTCCGAGCCCTCTCCGCCTCCGGCCGCCGCCGAAACCGCCACGGAAGCCGTCGCTGGGACCTCTGGCTCTGCTCAGGCGGAGGATCACGATGGCGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAGGAGGACGGCGTTTCCAATTTGGAGACGCCATGTGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTCCAGCATTGGTGCGATGAAAAAGGAGACATAACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCGCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGTGGTGGCTGGACAATATCTGGCACGCCTTTGGACCTGCGTGATCCTCGACTCTTGGCCATTGCAGAGGCAGAACGTCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTTTAATTTTGATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCTCAGATGGTGATGCTAATGATGATGATCCATCCAATTTTTTCTCTCTATTCTTGCTTCGAGCTGCTGGATTTTTATTACCTTGCTACATTATGGCCTGGGCAATCAGTATTCTGCAGCGTCGGCGACAGAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTACAATCTGGACAGCGTAGAGGTCTACAGTTCGCAATAGCACCAGGACCACCCACAGTACACCAGGAACAAGTGTAA 981 0.5199 MTKMTLRTCFDNVEILTCDDERIILYNTGFDLSFVVPMSDHLVLFVDRLACPVPVDPVAQPAQLPSEPSPPPAAAETATEAVAGTSGSAQAEDHDGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDGDANDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPPTVHQEQV 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7280g00001 326 MobiDBLite consensus disorder prediction 60 99 - -
Mupr7280g00001 326 SUPERFAMILY RING/U-box 106 158 - -
Mupr7280g00001 326 Pfam Protein of unknown function (DUF3675) 159 278 IPR022143 -
Mupr7280g00001 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 163 IPR013083 -
Mupr7280g00001 326 Coils Coil 196 216 - -
Mupr7280g00001 326 FunFam RING/FYVE/PHD zinc finger protein 96 164 - -
Mupr7280g00001 326 CDD RING_CH-C4HC3_MARCH 108 154 - -
Mupr7280g00001 326 SMART ringv_2 107 154 IPR011016 GO:0008270
Mupr7280g00001 326 Pfam RING-variant domain 108 153 IPR011016 GO:0008270
Mupr7280g00001 326 ProSiteProfiles Zinc finger RING-CH-type profile. 100 160 IPR011016 GO:0008270
Mupr7280g00001 326 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 38 288 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7280g00001 Mupr-Chr7280 1140 5566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7280g00001 107 183 C3H Transcription Factor Family AT2G37950 37.079 3.26e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7280g00001 - - gmx:100779674 457.988