Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7175g00001 ATGGGGACAAAGGCAAAGAAAGCCATGAAGAAGAATATGAAAAGGGCTACCGCCAATAAGCCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTCCGCGCAAGCTCGCCGTGCAGAAGCCGCCGGAGAATACCGCCACGGTATTGTACGTTGGTCGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGGTTGAGAATTGCGAGAAATAAAAAGACTGGAAAACCAAGACATTTTGGGTTCATAGAATTTGAATCTCCAGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAACACCTTCTCCAAGTTCATGTCATACCTACTGAACATGTTCATCCAAGATTATGGAGAGGATTCAATTACCGTTACAAGCCATTGGATTCAGTCCAAATTGAACGGAAGCATCATGACAAGTCTGATTCTCAGTATAATGTTCTGTTCCTTGACGTTTTCATTCCACAGGAAAGAACATTGGAAGAGCACAAGAAATTGGTGGAGAAGATTATGAAACATGACCAAAAGCGACGTAAAAGGATAGAGGCTGCTGGCATTGAATATGAATGCCCTGAGATTATGCGTCAGAGGAAGCCTGCTGATACCATGTCACGAGGATTCACAAGAGACTGCTGTTTTAGTAAATATGCTCCTAAGAAGATGATCAGCGATAACTACAATTCTTGTATACTGTGA 747 0.4244 MGTKAKKAMKKNMKRATANKPSEGADFLPLEGGPPRKLAVQKPPENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKPRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVHVIPTEHVHPRLWRGFNYRYKPLDSVQIERKHHDKSDSQYNVLFLDVFIPQERTLEEHKKLVEKIMKHDQKRRKRIEAAGIEYECPEIMRQRKPADTMSRGFTRDCCFSKYAPKKMISDNYNSCIL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7175g00001 248 CDD RRM_NIFK_like 50 123 - -
Mupr7175g00001 248 SMART rrm1_1 50 123 IPR000504 GO:0003723
Mupr7175g00001 248 SUPERFAMILY RNA-binding domain, RBD 28 137 IPR035979 GO:0003676
Mupr7175g00001 248 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 218 - -
Mupr7175g00001 248 Gene3D - 3 124 IPR012677 -
Mupr7175g00001 248 MobiDBLite consensus disorder prediction 1 30 - -
Mupr7175g00001 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Mupr7175g00001 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7175g00001 Mupr-Chr7175 12682 15646 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7175g00001 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 1.56e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7175g00001 K14838 - gmx:100778780 340.117