Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7172g00012 ATGGTGAAGACGCAGGCCCAAGGCCCAAGGGTTGAGGAAGGGTGTACGTGGGCCACTCAGAAAACGACGCTAATTGCAAAGGTACAGAGAGGGTTCCTTGTGAGAGTGTATTTATGCACTGTGTGTGCTTCTTCTTCAACAAAGCCAAAGCAAAGAGGTGAAGAATTGGAGAGAGAGAGAGAGAAATTTTACTCTAGTGAGCCGTTCTTCTTGTCGAATCATACTGATACTATGTACAATTATTCCCAAGTTGATTGTAGTCGTCATTCAATGGCTCATACTCCTTATCCTTGTGGTGATCCTTATTTTGGTAGTTCATTAGTTGCTTATGGACCACAGGCTATTAATCAACCCCAAATGTTCCCTCAGATGCTGGGATTAGCATCCACAAGAATTGCATTACCAGTTGAGCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCACGGCACCGCCATGCGTTGAAAAGGGTTAGGGGATCTGGGGGACGCTTTCTTAGCGCCAAACAGCTGCAACAGTCTAATGCAGAACTTGTCACTGACGCCCATTCAGGCCAAAACCACCCTGTCAATGTTCATCAAATGAAAGATGCATTAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTATGAAAGCCATCTCTGGCTTAACAATGTCCGGTAACAGTGTCAGTTTCAGGCAGCCTGAGCACAACTTCTTGGGGAACTCCCCAAACATAGGCGGTTGGCCAGTGAGAGGGGGCACCAATTCACTGCTGGTCTGGCAA 873 0.4605 MVKTQAQGPRVEEGCTWATQKTTLIAKVQRGFLVRVYLCTVCASSSTKPKQRGEELEREREKFYSSEPFFLSNHTDTMYNYSQVDCSRHSMAHTPYPCGDPYFGSSLVAYGPQAINQPQMFPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQQSNAELVTDAHSGQNHPVNVHQMKDALEVESHPSRTGENASMKAISGLTMSGNSVSFRQPEHNFLGNSPNIGGWPVRGGTNSLLVWQ 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7172g00012 291 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 143 197 IPR001289 GO:0003700|GO:0006355
Mupr7172g00012 291 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 68 247 IPR001289 GO:0003700|GO:0006355
Mupr7172g00012 291 Gene3D - 140 202 - -
Mupr7172g00012 291 ProSitePatterns NF-YA/HAP2 subunit signature. 145 165 IPR018362 GO:0003677|GO:0016602
Mupr7172g00012 291 ProSiteProfiles NF-YA/HAP2 family profile. 140 200 IPR001289 GO:0003700|GO:0006355
Mupr7172g00012 291 SMART cbf3 139 200 IPR001289 GO:0003700|GO:0006355
Mupr7172g00012 291 PRINTS CCAAT-binding transcription factor subunit B signature 174 197 IPR001289 GO:0003700|GO:0006355
Mupr7172g00012 291 PRINTS CCAAT-binding transcription factor subunit B signature 143 165 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7172g00012 Mupr-Chr7172 39433 43354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7172g00012 90 206 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.504 6.62e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mupr7172g00012 CBFB_NFYA 7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7172g00012 K08064 - gmx:100792905 343.969