Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr716g00002 GAACAAGATGGGACGGCCGTCTTTCTATTTTGGGGCCATAATATCTTCCCATATCAGGAACCTCCCATCCTCCCATCCTCCCATCCCCTTCTCACTTCTCACTTCTCACTTCTCACACGCACCTCATGGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTACCGGAGAAGATGCAGGATTCGTGCGCCCTGCTGCAACGAGATCTACTCGTGCCGTCACTGTCATAACGAGGCAACGCTTGTTGAAGAATCTCTTCGATCGCCACGAACTCGTTCGCCAAGATGTCAAAAAAATTGTTTGTTCAGTTTGTGACACCGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTTAGAATGGGAGAATATTTCTGCAACATATGCAAATTCTTTGATGATGATATTGAGAAACAAGTGTTTCATTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGTGGGTCTTGTTATTCAGTCACTCTGCGTGATAAACATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCGATTTGTTACGAGTACCTTTTTGATTCGTTGAAAGACACTATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTAGAGATGGTAAAACATGACAAATATTGTTGTCCCATATGCTCCAAGTCGGTGTTTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGCAACTGCCATGCCTGAAGATTATCGATCCAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACCGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAATTGCGCCTCCAGTTCTTCCTTAATGACCAGATTCTTGTGGTACAAGAAGCGAACACCATCAGGCAGAAGATTGAAGTTAGCAGCCGTTCAGAT 972 0.4393 EQDGTAVFLFWGHNIFPYQEPPILPSSHPLLTSHFSLLTRTSWNVLILGRWDTGASITGEDAGFVRPAATRSTRAVTVITRQRLLKNLFDRHELVRQDVKKIVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDIEKQVFHCDDCGICRVGGRDNFFHCKKCGSCYSVTLRDKHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHHECYLEMVKHDKYCCPICSKSVFDMSKTWKRIDEEQLPCLKIIDPGRFGYYVMTAMTQPKFTSTFLAKNVVTADHIILVQLRLQFFLNDQILVVQEANTIRQKIEVSSRSD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr716g00002 324 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 83 248 - -
Mupr716g00002 324 Pfam Ring finger domain 188 231 IPR001841 -
Mupr716g00002 324 SUPERFAMILY Zinc hairpin stack 125 182 IPR037275 -
Mupr716g00002 324 SUPERFAMILY CHY zinc finger-like 90 123 IPR037274 GO:0008270
Mupr716g00002 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 252 IPR013083 -
Mupr716g00002 324 ProSiteProfiles Zinc finger CHY-type profile. 83 122 IPR008913 GO:0008270
Mupr716g00002 324 Pfam CHY zinc finger 90 134 IPR008913 GO:0008270
Mupr716g00002 324 SUPERFAMILY RING/U-box 188 238 - -
Mupr716g00002 324 CDD RING-H2_Pirh2-like 188 232 - -
Mupr716g00002 324 ProSiteProfiles Zinc finger CTCHY-type profile. 124 188 IPR017921 -
Mupr716g00002 324 ProSiteProfiles Zinc finger RING-type profile. 189 232 IPR001841 -
Mupr716g00002 324 SMART ring_2 189 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr716g00002 Mupr-Chr716 4937 9146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr716g00002 92 251 C2H2 Transcription Factor Family AT3G18290 40.588 2.26e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr716g00002 K10144 - gmx:100792038 350.132