Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7052g00001 ATGTCTCACTCCGAAATGTCCAGCGCAAAGAAAAGTCGTGGTCGCCAAAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTCACGTTCTCCAAGCGCCGCAGCGGGCTTTTCAAGAAAGCGAGTGAACTCTGTACTCTCTGCGGTGCTGACGTGGCACTGGTTGTATTTTCGCCGGGTGAGAAGGTGTTTTCCTTCGGCCACCCCAACGTGGACGCTGTGATAGACCGCTATATGGCGCGGGCCCCACCGCCGAACTCGGGCACCATGCAGTTCATCGAGGCCCACCGCATCGCGAACGTGAATGAGCTGAACGCTCAGCTCACTCAGATCAACAACCAGCTGGACGCGGAGAGGAAGCGTGGCGAGGAGCTGGACCGTCTGAAGAAAGCTGCGCAGGCCCAGCTGTGGTGGGCCAGGCCGATCGACGAGATGACTAAGCCCCAGCTGGATCAGTACAAGGCGGCCATGGAGGAGCTGAAGAAGCACGTTGCCCGCCTTGCTGATAGGACCATTCTTCAGAGTGCTGTTAACCCCCCACAGTTTTACCCTGGGGCTTCTTCCTCTTCCAACATCGCCCATCAGCCACAGCCACAGCCACCGCCACAGCCACTTCCACAGTCACTGCCACCACTGCCACCCCAGGTGTTTCCTCCACAGCCACAGTCACTGACACCGCTGCCATCCCAGTTGTTTCCTCCACAGCTGATTCAGCCATCCATGCTTCAGAACTATATGTTTGTTGATGGGACCCTCATGAACCACCATGGCTTTAATGACATGGGAATGGGTGGATTTGGACCTGCTGGTGACAAGGTTAGCACTGAATTGGGTTCGGATATTCTAGACATGTCTTGA 867 0.5571 MSHSEMSSAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDAVIDRYMARAPPPNSGTMQFIEAHRIANVNELNAQLTQINNQLDAERKRGEELDRLKKAAQAQLWWARPIDEMTKPQLDQYKAAMEELKKHVARLADRTILQSAVNPPQFYPGASSSSNIAHQPQPQPPPQPLPQSLPPLPPQVFPPQPQSLTPLPSQLFPPQLIQPSMLQNYMFVDGTLMNHHGFNDMGMGGFGPAGDKVSTELGSDILDMS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7052g00001 288 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Mupr7052g00001 288 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Mupr7052g00001 288 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Mupr7052g00001 288 Coils Coil 101 138 - -
Mupr7052g00001 288 Coils Coil 153 173 - -
Mupr7052g00001 288 Gene3D - 91 179 - -
Mupr7052g00001 288 MobiDBLite consensus disorder prediction 1 22 - -
Mupr7052g00001 288 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Mupr7052g00001 288 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 69 IPR002100 GO:0003677|GO:0046983
Mupr7052g00001 288 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Mupr7052g00001 288 FunFam Agamous-like MADS-box protein AGL62 25 91 - -
Mupr7052g00001 288 MobiDBLite consensus disorder prediction 181 197 - -
Mupr7052g00001 288 MobiDBLite consensus disorder prediction 181 234 - -
Mupr7052g00001 288 Gene3D - 25 89 IPR036879 GO:0003677|GO:0046983
Mupr7052g00001 288 PANTHER MADS BOX PROTEIN 15 170 - -
Mupr7052g00001 288 MobiDBLite consensus disorder prediction 198 231 - -
Mupr7052g00001 288 MobiDBLite consensus disorder prediction 1 25 - -
Mupr7052g00001 288 CDD MADS_MEF2_like 14 82 IPR033896 GO:0000977|GO:0045944
Mupr7052g00001 288 SUPERFAMILY SRF-like 14 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7052g00001 Mupr-Chr7052 6672 7671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7052g00001 9 193 Type I MADS-box Gene Family AT5G60440 55.319 1.65e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr7052g00001 SRF-TF 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7052g00001 - - gmx:100780445 345.51