Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr7042g00001 ATGAAGTGTTCTGTTCTGCGGCTCTGTTTTCCGTTATATACCTCCGGCACCGCTATTGCCCATAATAAGGCTATTTCCACACTCTCAGAAGGAAAACAAGGGTTCGCCATGTCCGGCACAGGGGTACGGTTGCACATCCAAGATCGCTATGTGGTGATGGATAATGGCATACTCCAAGTTACTTTGTCAAATCCAGGTGGAATTGTCACTGGGATACGATATAATGGTGTTGATAATTTGCTTGAAGTTCTTAACAAGGAGTCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATCTTTGATGTCACATGTGAACTCAAGATGTTATGGTCCAGGATTCAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAGTTTGTCCCTTTAAATATTGACAAAAGGTCCTTGCTCCTTGTTTTACCAATAGCTGTGGGATTAAATTTGTGGATGGTCAATTTCAGATTCATAATGCTTCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAACTGGATGGCCAGATTTTGATCTTAGTGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCGAAGGGTTATGCCTTTTCCGGAAGATCGGTTACCAGGAAGATGCAAACCCTTGGGCTACCCAGAAGCTGTCCTACTAACCAATCCCAAGGATCCACAATTGCATGGAGAGGTGGATGACAAGTATCAATACTCATGTGTAAACATGCATAATCGAGTCCATGGGTGGATATCTTTCAGTCCATCAGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTAACCTCACACGTAGGCCCCACCACTCTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATTTGGTGCCTAAATTTAGAGGTGGTGAATCATGGAAGAAGGTTTTTGGTCCTGTATTTATTTATCTCAATTCTGGACCAGTTGGTGATGACCCACTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGGTGGCCATATCATTTCCCAGCTTCAGAGGATTTTCTAAAATCAGATCAACGGGGAAACATCAGTGGCAGATTACTTGTCTTAGACAGGTACATCTGCACAGACTTAATGTCAGCAAAGGGTGCTTATGTTGGTCTGGCCCCACCTGGAGATGCAGGGTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAAAGCAGATGAGAATGGATTTTTTACCATTAGAAATGTACGTCCAGGAGACTATAACCTTTTTGCCTGGGTACCTGGTTTTGTTGGGGACTACAAATTTGGTGATTTTATGAAGATAACATCAGGTTCTTACACTGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGCCCCACATTGTGGGAAATAGGTATTCCTGATAGATCCGCTGCTGAATTTTATGTTCCTGATCCCAATCCACAGCATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTATGGGACAGGTATACAGAATTGTATCCTGATGCAGATTTGGTTTACACAATTGGTGTTAGTGACCATACGAAGGATTGGTTTTATGCGCAGGCTACGAGAAAAAAAGAGGATAACACTCTTGAAGGAACAACTTGGCAAATCAAGTTCGAAATCAGTGGAGTGGTTCCGAGAAGTACATACAAACTGAGAGTGGCACTTGCATCTGCAACATTAGCTGAATTGCAGATTCGAATAAATGATCCCAATGCAAGGCGACCCCTATTTACCACTGGATTAATAGGAAGGGAGAACTCAATTGCAAGACATGGAATTCACGGACTCTATTGGCTGTACCATGTTCTCTTCTTATTGATGGCACAAATACCATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAAGATAATCTCTCAGCCAATTACTCTTTGCACACTTCTCTTGTTCACTGCAAATATCACCATGCCGATACTGGGGGTGCAACTTAGTATTCAAGATAATCATGTGGTGATGGACAATGGCATACTGAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGATAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGGGCTCACCGGCAAGTACAGGAACCGGTGGTTCATTTGATAAATTAAAGTCAAATGTGGCTATTGTGATGCGTGACTGCAGCATCAAAGGAACAAGTTTCCAAGTTATGGTTGAAAATGAGGACCAGGTTGAGTTATCCTTCACTAGGACGTGGGATGTCTCTCTCGAGGGCAAGTTGGTTCCTTTAAATATTGACAAAAGGTTCGTAATGCTTCGTGGTACTTCCGGCTTCTACTCCTATGCAATTTACGAGCACTTGGAGGACTGGCCTGCTTTCAATCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGATTCTGGCTAATTACGCCCAGCAATGAATTTCGATCTGGTGGGCCCGTCAAACAAAACTTAACTTCCCACGTCGGCCCTACCTCGCTTGCTGTGTTTCTGAGCGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATGCCGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTTCGTATGATGGAGGTGACCCCCTTAAGCTATGGCAAGACGCTAAACTACAGATGTTGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCAAAGTGGGACGAACGTGGTAGTGTTAGTGGCAGGCTTTTGGTCAGAGAGAGGTATATAAACGATGACTATATGTCAGCAAAAGGTGCCTATGTTGGTTTGGCTCCACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGATGATGATGGCTACTTCTCTATCAGCAATATACGTGCTGGCGACTACAATGTTTTCGCGTGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATGAACATAAGAGAAGGTAGTGACATCGACCTCGGTGATCTTGTATATGAACCACCAAGAGATGGTCCAACATTGTGGGAAATTGGTATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGATATAGACTTGATCTACACAGTTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACGAGGAAGAAAGATGATAACACATATCAAGGAACCACGTGGCAAATCAAGTTTCAGCTTGATGAGGTGAACAAAAACAGTAGCTATAAACTGCGGGTGGCTTTGGCATCAGCAACATTATCTGAACTTCAGGTCCGAGTTAATAATCCAAAGGCGATTCGTCCTGTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCATGGAATTCATGGACTTTATTGGCTTTACAATGTAGACATAGCAGGTACTCAACTTGTCGAAGGAGAAAATACCATCTTTTTGACACAGCCCAGAGCCAATGGTCCATTTCAGGCCATAATGTATGATTATATTCGTTTGGAAGCTCCACCCTCGTCTAGCTCCAATAGGAAAATTTGA 4071 0.4279 MKCSVLRLCFPLYTSGTAIAHNKAISTLSEGKQGFAMSGTGVRLHIQDRYVVMDNGILQVTLSNPGGIVTGIRYNGVDNLLEVLNKESNRGYWDLVWSAPGSKGIFDVTCELKMLWSRIQGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRSLLLVLPIAVGLNLWMVNFRFIMLRGSSGFYSYGIYEHLTGWPDFDLSETRITFKLRKDKFQYMAMADNRRRVMPFPEDRLPGRCKPLGYPEAVLLTNPKDPQLHGEVDDKYQYSCVNMHNRVHGWISFSPSVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGESWKKVFGPVFIYLNSGPVGDDPLWLWEDAKIQMMNEVQRWPYHFPASEDFLKSDQRGNISGRLLVLDRYICTDLMSAKGAYVGLAPPGDAGSWQRECKDYQFWTKADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFGDFMKITSGSYTELGELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPQHINKLFINHPDRFRQYGLWDRYTELYPDADLVYTIGVSDHTKDWFYAQATRKKEDNTLEGTTWQIKFEISGVVPRSTYKLRVALASATLAELQIRINDPNARRPLFTTGLIGRENSIARHGIHGLYWLYHVLFLLMAQIPYILRNQDAPVPSKIISQPITLCTLLLFTANITMPILGVQLSIQDNHVVMDNGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWGSPASTGTGGSFDKLKSNVAIVMRDCSIKGTSFQVMVENEDQVELSFTRTWDVSLEGKLVPLNIDKRFVMLRGTSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTSLAVFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGGDPLKLWQDAKLQMLVEVQSWPYSFPESEDFAKWDERGSVSGRLLVRERYINDDYMSAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVFAWVPGFIGDYKYDVVMNIREGSDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDIDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLDEVNKNSSYKLRVALASATLSELQVRVNNPKAIRPVFSSGLIGRDNSIARHGIHGLYWLYNVDIAGTQLVEGENTIFLTQPRANGPFQAIMYDYIRLEAPPSSSSNRKI 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr7042g00001 1356 CDD RGL4_N 708 1017 - -
Mupr7042g00001 1356 SUPERFAMILY Galactose-binding domain-like 503 659 IPR008979 -
Mupr7042g00001 1356 Gene3D - 504 662 - -
Mupr7042g00001 1356 Gene3D - 1154 1345 - -
Mupr7042g00001 1356 Gene3D - 174 370 IPR014718 GO:0030246
Mupr7042g00001 1356 FunFam Rhamnogalacturonate lyase B 394 493 - -
Mupr7042g00001 1356 CDD RGL4_M 397 496 IPR029413 -
Mupr7042g00001 1356 Gene3D - 1046 1137 - -
Mupr7042g00001 1356 Gene3D - 394 492 - -
Mupr7042g00001 1356 Gene3D - 706 1017 IPR014718 GO:0030246
Mupr7042g00001 1356 FunFam Rhamnogalacturonate lyase B 1044 1143 - -
Mupr7042g00001 1356 CDD RGL4_N 42 358 - -
Mupr7042g00001 1356 SUPERFAMILY Starch-binding domain-like 397 493 IPR013784 GO:0030246
Mupr7042g00001 1356 CDD RGL4_C 1158 1345 - -
Mupr7042g00001 1356 SUPERFAMILY Galactose-binding domain-like 1153 1345 IPR008979 -
Mupr7042g00001 1356 CDD RGL4_C 508 659 - -
Mupr7042g00001 1356 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 711 1348 - -
Mupr7042g00001 1356 SUPERFAMILY Starch-binding domain-like 1090 1137 IPR013784 GO:0030246
Mupr7042g00001 1356 SUPERFAMILY Galactose mutarotase-like 201 362 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mupr7042g00001 1356 Pfam Polysaccharide lyase family 4, domain II 420 492 IPR029413 -
Mupr7042g00001 1356 Pfam Polysaccharide lyase family 4, domain II 1070 1142 IPR029413 -
Mupr7042g00001 1356 CDD RGL4_M 1047 1146 IPR029413 -
Mupr7042g00001 1356 Pfam Polysaccharide lyase family 4, domain III 506 659 IPR029411 -
Mupr7042g00001 1356 Pfam Polysaccharide lyase family 4, domain III 1156 1344 IPR029411 -
Mupr7042g00001 1356 Pfam Rhamnogalacturonate lyase family 175 266 IPR010325 -
Mupr7042g00001 1356 Pfam Rhamnogalacturonate lyase family 43 161 IPR010325 -
Mupr7042g00001 1356 Pfam Rhamnogalacturonate lyase family 703 916 IPR010325 -
Mupr7042g00001 1356 SUPERFAMILY Galactose mutarotase-like 709 1008 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr7042g00001 Mupr-Chr7042 2224 14722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr7042g00001 37 659 Polysaccharide Lyase AT1G09890 64.480 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr7042g00001 K18195 - gmx:100793563 1249.96