Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr701g00003 ATGGATTCCCAAACCCTAGACTCCACCCAACTGTTCCTCAGCGCCCGCCAACCCTCCCCCTCTCCGCCACCCTCCCCCTCCCTCCACCCAGTCCCCCCCTCCGTCCCGCACTCCAAACTCATCCCTCAAACTCGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCCACTCTCTCTCCTACTTCCTCTCCCATTTCCACTCCGACCACTACGCTGGCCTCTCCTCCTCCTGGTCCCTCGGCGTCATCTTCTGCTCCGCTACCACCGCCCTTCTCCTCCGCCGCATCCTCCGTGTCCCCGCCCCCTTCGTCGTCCCTCTCCCCCTCCACCAGCCGCTCCGCATCGACGGCGCCGAAGTCACCCTCATCGACGCCAACCACTGCCCCGGCGCCGTCCAGTTCCTCTTCGCCGTCCCCCGCGCTGACGGCACCGCCCTCAGGTACGTCCACACCGGCGATTTCCGCTTTTCTAATTCCATGATTTCAGAACCCGCCCTCGCTCCCTTTATCGGCGCCGATGCGGTGTTTCTCGACACCACCTATTGTAACCCTAAGTTTGTGTTCCCCTCGCAAGAGGAGTCTGTTGAGTATGTTGCTAGTGTTGTGGAGAGAGTTGAGCGTGAGTGCGGTGGGAATAGTGATAGTGTTCTGTTTCTTGTTGCTACTTATGTCGTTGGGAAGGAGAGGATTTTGCTTGAGCTTGCACGTAGGTTTAAGAGGAAGATACACGTGGATGCTAGGAAGATGGAGGTTTTAAGGGCTCTTGGGTATGGGGAGAGTGACCAATTTACTGAGGATGGGTTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTTAGAATGAAGGAGGTTATGGATGAGAGAGGGGGATCTTACTCCAAGGTTGTTGGCTTTGTTCCCACCGGATGGACCTATGAAGTGAAGAGGGGTAAGTTTGCGGTCAAGTCCAAGGATTTGTTTCAGATTCATCTTGTGCCGTATAGTGAGCATTCCAACTATGATGAGCTGAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGTGTTGTTCCAACGGTGGGTTTGGATGTTGAGAAGAGTAACAGTAAACATGCTGACAAAATGAGGAAGTATTTTGCCGGATTGGTTGATGAGACTGCCAATAAACAGGAGTTTTTAAGGGGTTTTCATCGTGCTCCTGGTGAAGTGGGTTTTGAGGTTGAGAAAGGTGTTAGTGATGCTCTGGAACCAGGGCAAGACATGGGGAAAGAAGTCAATCCATCGGAGGCAGAAGGTAATAAAAGTATTGATCCAGATGTGGCTGTGGGTTTGTCTTCTTTTATGGGAGATACTTGTACACAAGATCCTACTTTGCTGAGTGATGAAGACAAAGATAAAATAATTCAGGAGCTTAGTTGCTGTTTGCCTGCATGGGTCACTCGAAACCAGCTGTTAGATCTGATCAGCATCTCAGGGAGCAATGTTGTTGAAGCTGTCTCTAATTTCTATGAACGTGAAACAGAATTTCACGAGCAAGTGAACTCCTGTCAACCTCCTGTTTCAACACCCAAGTGCTGCTCATCAAATGACACTGATTCACCTGCAAAACCATGCCTTAATACAAACAACGCATTAAAAAATATTGATATTTTTCCAAGTCAAGACTCTAAAATAACTAACCTGAGGCATGCAGTACCTAGTCCCATTTCTCCTGCCAAAAGGAAGAGAGGTAGTGAAAGTAAGCAAAACAAAAAAGGCAAAGTCAAAGTCAAGGCAAAATCTGAACCAAGTGATTCAAAGCAATTCACAATTACGAGATTCTTCAGTAAAGTAATGCCTGAGACGCCTGGCGCTAGTCAATCTGATAGTTTTGGACCAAAGCTTGACCGAAGCTCCAACGTTGAAGACTTGCTGCCAACTGATGTTGGACAAATGTACAAGGATGAAATTGATCAATTTATGCAAATAATAAATGGTAATGAGTCATTAAAAAAATATGCCATCACTATAATTGAGAAGACAAAAGGAGATGTCAGTAAGGCCTTGGACATATATTACTGTAATTCTGACAATCTTGGTGAAAATGAAATATCAGTCCAAGTGGAGGGCAAAATTGATAGACCTATAGTAAAGAAGCATGCATCAGAGGAATTGAGAATTATACCTGATATTTCTGAGCAGAAAGCGTTAAAAGATAATGTAAATGCTACTCATCTATCTCTACCACCTGAGAAATACAACCCTAAAGAACATGCGTGTTGGAGAGATGGACAGCCTGGACCATATTTACATATTGCACGAACCTTCAACCTGCTTGAGGGTGAGAAAGGAAAGATAAAAGCTACGTCATTGTTATGCAACATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGCAGATGTGCTTCCTGCAGTGTATCTATGCACAAACAGAATTGCTGCAGACCATGAAAATAAGGAACTAAATATAGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTAAAAATAAAGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCTACACCACTTCTAATTAAAGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAGTGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGTCGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTCAGGAACCTAAGGATTGGGGCAATGCTTAGAACTGTTTTGCCTGCACTGGCTCATGCTGTTGCTATGAATTCTTGCCCTACTTTGCACCAAGAAGGAACTGTAGAAAATTTGAAGGAGAAACTTCAGGATAGTACCATCAACCCACTACAGAAGCACAATAAGGTGGAGGATCTTGATAATCCTCAGCTACAAGCATGTGTATTAATGCAGTTTGCAAGAGAGCTATGGAATTTTCTCATTATAACTACAAAGATTTTGATGCTCTATTTCATGAACAAAAGTACTATAGAAAACAGAGAACTGGAGGAGCATGGGGAAATTCACATGTTTGTTCTTTCTGTGGCAGTTGTTGAAGCATATAACATACAGCCAAATTTGGATGTCATAGTCCCATCTCTCATGAACAAAGGCATTGATTTTTCAGTTTCAAGTTTGTCAATGGTTCCAGGAATCCCTATTAAGCCTATGCTAGCGAAGATCACCAATGGTATTCCCCAAGCATTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAAATTAGTCAATGGATCAATTCGTGTTTTTTCAAGAAATGGGGACGAATCAACATCAAGATTTCCTGATCTGATTGACATAATTCAGGCATCCACCAAACCTGTTGCATCAACTTTCATAATGGATGCAGAAATTGTTGGTATTGACAGAAAAAATGGATATAGGATCATGTCTTTCCAAGAGCTATCTTCACGTGGGAGAGGTGGCAAGGATACATTAGTCACTACAGAGAGCATCAAGGTGGATATTTGCATCTTTGTCTTCGATATCATGTTTGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTTAGAAGAAAGTGTATGCATCTAATCATCTTATTAAATTGTGAATCTTCTGCATTTTCTGGCAAGACAAAAATGTGCTATCTGAAGGATTTATTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAGGGAAACAACTATTGAAGCAGATGATGCTTGCTTAACCTGTGAAGCCACATTAACTAAGATAAATGCTTTCCTGGAAGATGCACTTCGCTCTTCATGTGAAGGAATTATGGTGAAAACATTGGATGTTGATGCTGGGTACTCTCCATCAAAGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGATAGTCTTGATTTAGTGCCAATTGGTGCTTGGCATGGAAATGGGAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTAAATCCTGAAACTGAGGAGTATCAAAGTGTATGCCGTGTGATGTCTGGATTCTCAGATTCATTTTACGTGGAGGAATTTGATATTGCGCTGCAGATGAAAGAATTATTCTCTGGTGACAAAGTCTTGTCCAAAAAACCACCATATTATCAAACAGGAGAGGCACCAGACATGTGGTTTTGTCCACAAGTCGTTTGGGAAATAAGAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCCATTGGTTTAGTTCATCCATCTCGAGGCATCTCAATCAGATTTCCAAGATTTATTCGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTGCCGATATAGTTGAAAAGTTTCATTCTCAGACTCGGAAGATGGATGTCACAGCTGAAGGACAAGAGCGAATGCGCAGCGATGAGCGAGCCTCGTGA 4512 0.4371 MDSQTLDSTQLFLSARQPSPSPPPSPSLHPVPPSVPHSKLIPQTRFLVDAFRHAGPHSLSYFLSHFHSDHYAGLSSSWSLGVIFCSATTALLLRRILRVPAPFVVPLPLHQPLRIDGAEVTLIDANHCPGAVQFLFAVPRADGTALRYVHTGDFRFSNSMISEPALAPFIGADAVFLDTTYCNPKFVFPSQEESVEYVASVVERVERECGGNSDSVLFLVATYVVGKERILLELARRFKRKIHVDARKMEVLRALGYGESDQFTEDGLESNIHVVGWNVLGETWPYFRPNFVRMKEVMDERGGSYSKVVGFVPTGWTYEVKRGKFAVKSKDLFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSNSKHADKMRKYFAGLVDETANKQEFLRGFHRAPGEVGFEVEKGVSDALEPGQDMGKEVNPSEAEGNKSIDPDVAVGLSSFMGDTCTQDPTLLSDEDKDKIIQELSCCLPAWVTRNQLLDLISISGSNVVEAVSNFYERETEFHEQVNSCQPPVSTPKCCSSNDTDSPAKPCLNTNNALKNIDIFPSQDSKITNLRHAVPSPISPAKRKRGSESKQNKKGKVKVKAKSEPSDSKQFTITRFFSKVMPETPGASQSDSFGPKLDRSSNVEDLLPTDVGQMYKDEIDQFMQIINGNESLKKYAITIIEKTKGDVSKALDIYYCNSDNLGENEISVQVEGKIDRPIVKKHASEELRIIPDISEQKALKDNVNATHLSLPPEKYNPKEHACWRDGQPGPYLHIARTFNLLEGEKGKIKATSLLCNMFRSLLALSPADVLPAVYLCTNRIAADHENKELNIGGSLVTAALEEACGTNRLKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGSGSTSRKKGIIVHLMRSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSCPTLHQEGTVENLKEKLQDSTINPLQKHNKVEDLDNPQLQACVLMQFARELWNFLIITTKILMLYFMNKSTIENRELEEHGEIHMFVLSVAVVEAYNIQPNLDVIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVNGSIRVFSRNGDESTSRFPDLIDIIQASTKPVASTFIMDAEIVGIDRKNGYRIMSFQELSSRGRGGKDTLVTTESIKVDICIFVFDIMFANGEQLLGFPLRLRRKCMHLIILLNCESSAFSGKTKMCYLKDLFYDEKPGYFEYARETTIEADDACLTCEATLTKINAFLEDALRSSCEGIMVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDSLDLVPIGAWHGNGRKAGWYSPFLMACLNPETEEYQSVCRVMSGFSDSFYVEEFDIALQMKELFSGDKVLSKKPPYYQTGEAPDMWFCPQVVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFIRCVSDRNPEECSTAADIVEKFHSQTRKMDVTAEGQERMRSDERAS 1503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr701g00003 1503 ProSiteProfiles ATP-dependent DNA ligase family profile. 1191 1360 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mupr701g00003 1503 CDD OBF_DNA_ligase_I 1331 1481 - -
Mupr701g00003 1503 MobiDBLite consensus disorder prediction 618 633 - -
Mupr701g00003 1503 CDD Adenylation_DNA_ligase_I_Euk 1071 1325 - -
Mupr701g00003 1503 Pfam ATP dependent DNA ligase C terminal region 1348 1463 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mupr701g00003 1503 MobiDBLite consensus disorder prediction 1 34 - -
Mupr701g00003 1503 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 746 954 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mupr701g00003 1503 FunFam DNA ligase 187 343 - -
Mupr701g00003 1503 NCBIfam ATP-dependent DNA ligase 824 1477 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mupr701g00003 1503 Pfam DNA ligase N terminus 766 942 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mupr701g00003 1503 Gene3D - 1325 1493 IPR012340 -
Mupr701g00003 1503 Gene3D - 187 343 - -
Mupr701g00003 1503 Pfam ATP dependent DNA ligase domain 1080 1322 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mupr701g00003 1503 FunFam DNA ligase 1109 1238 - -
Mupr701g00003 1503 Gene3D DNA ligase/mRNA capping enzyme 1080 1324 - -
Mupr701g00003 1503 MobiDBLite consensus disorder prediction 17 34 - -
Mupr701g00003 1503 Gene3D - 743 1079 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mupr701g00003 1503 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 274 1491 - -
Mupr701g00003 1503 SUPERFAMILY Nucleic acid-binding proteins 1331 1479 IPR012340 -
Mupr701g00003 1503 SUPERFAMILY Metallo-hydrolase/oxidoreductase 43 366 IPR036866 -
Mupr701g00003 1503 CDD SNM1A-1C-like_MBL-fold 35 184 - -
Mupr701g00003 1503 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1104 1112 IPR016059 GO:0003909
Mupr701g00003 1503 MobiDBLite consensus disorder prediction 566 602 - -
Mupr701g00003 1503 FunFam DNA ligase 1327 1491 - -
Mupr701g00003 1503 Gene3D - 41 365 IPR036866 -
Mupr701g00003 1503 MobiDBLite consensus disorder prediction 618 637 - -
Mupr701g00003 1503 Pfam DNA repair metallo-beta-lactamase 261 366 IPR011084 -
Mupr701g00003 1503 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1074 1328 - -
Mupr701g00003 1503 MobiDBLite consensus disorder prediction 1 16 - -
Mupr701g00003 1503 MobiDBLite consensus disorder prediction 1484 1503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr701g00003 Mupr-Chr701 23100 38853 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr701g00003 744 948 Core DNA Replication Machinery Family AT1G08130 36.585 8.24e-37 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr701g00003 - - gmx:100807673 2302.71