Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6961g00002 ATGGCCAAGAAACGAAAGCTTCGATCCTCCGACCCCGAGCCCACTAAACCCGTCGAAGTCGAACCGCACCAACAAGAGCAAGAGCCAGTGGAACTCGACCAGAATCCCAACCCCGAACCCACCCTCGAAGACCCCAACACTATGGCTCTCGACGAGCCGACACAAGAAGAGCAAGAGCAACAACCGCAAAACGTCGAAGAGGAGGAAGCAGAAGAAGAGGAACCAGAAACCATAGAGGACCAACAGGAGCAGGAGCCAGAAACCCTAGAAACTCCGAACGGTGCCGAAGCGAACGGCGCTGAGGAAGAAGCGAACAATGAAGAGGAGAACGAGGACCTCACCCTGGAAGACGAGCCCGTGGAGAAGCTTTTGGAGCCCTTCACGAAAGAGCAGCTGCACTCCCTCGTCAAGCAGGCTGCCGAGAGGTTCCCGGAATTCGTCGAGAGCGTCCGCCAGCTCGCCGACGTGGACCCCGCGCACCGCAAAATCTTCGTCCACGGCCTCGGCTGGGACGCCACCGCCGAAACCCTAACTGCCGTGTTCGGCAAGTACGGCGAGATCGAGGATTGCAAGGCCGTCACCGACAAGGTGTCTGGCAAATCCAAGGGCTACGCCTTCATCTTATTCAAGCACAGGGACGACGCTCGCAAGGCGCTCAAGCACCCGCAGAAGAAGATCGGAAACCGCACCACCTCATGCCAATTGGCCTCCGCCGGTCCCGTTCCGGCACCGCCACCAAACACTAACCCGGTTTCCGAGTACACCCAGAGGAAGATCTTTGTGAGCAATGTGAGTGCGGATATTGATCCCCAGAAACTGCTTGAATTTTTCAATCAGTTTGGGGAGGTTGAGGATGGCCCTCTTGGTCTCGATAAGAACACTGGGAAGCCTAAGGGTTTTGCGCTGTTTGTTTACAAGTCTGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCTCACAAGAATTTTGAGGGGCATACTTTGTATTGTCAGAAAGCTGTTGATGGTCCTAAAGGGAACAAGGGGTATTACCATCAGCAGCAGCATCAGCACCATTCTCATTCCCATCACCATCACCATCACCAGCCTCATTATCCCAGGAAGGAGAAGAATAAGTATTCCTCTGGTGGTGGTGGGCCGTCTCATGGCAGTGGTCATTTGATGGCCCCCTCCGCCTCTGCTGTGGGGGGTTTCAACCCTGTGCCTACACAGGGGCTGAATCCGGCACTTGGACAGGCTTTGACCGCATTGCTTACTAATCAAGGGGCTGGGTTGGGGCTTGGGAATTTGCTCGGAGGGCTTGGTGGTGCACCGGTTAACCAGGCTGGGGCGCCAGCTCCATATGGCAATCAGCCTGCTATGGGCTATGGGAACCAGCCAGCAATGCAACAGGGATACCAGAATCCTCAAATGGGGCAAAGCAGTGGTGTTAGACCTCACCCTGGTGCTGGCGCTCCTTACATGGATACCCTCATAAGATGCATCAATCATTTAGTTTTGGACTCCGCTGATTCTTCTGAAGTACCAGGCACTATTCAAATGCATCTTTTAATTGTAATTTTAGTTACTATTTGA 1572 0.5407 MAKKRKLRSSDPEPTKPVEVEPHQQEQEPVELDQNPNPEPTLEDPNTMALDEPTQEEQEQQPQNVEEEEAEEEEPETIEDQQEQEPETLETPNGAEANGAEEEANNEEENEDLTLEDEPVEKLLEPFTKEQLHSLVKQAAERFPEFVESVRQLADVDPAHRKIFVHGLGWDATAETLTAVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAGPVPAPPPNTNPVSEYTQRKIFVSNVSADIDPQKLLEFFNQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYYHQQQHQHHSHSHHHHHHQPHYPRKEKNKYSSGGGGPSHGSGHLMAPSASAVGGFNPVPTQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGAPAPYGNQPAMGYGNQPAMQQGYQNPQMGQSSGVRPHPGAGAPYMDTLIRCINHLVLDSADSSEVPGTIQMHLLIVILVTI 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6961g00002 523 Gene3D - 245 385 IPR012677 -
Mupr6961g00002 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 327 IPR000504 GO:0003723
Mupr6961g00002 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 230 IPR000504 GO:0003723
Mupr6961g00002 523 Coils Coil 97 117 - -
Mupr6961g00002 523 MobiDBLite consensus disorder prediction 344 366 - -
Mupr6961g00002 523 SUPERFAMILY RNA-binding domain, RBD 151 241 IPR035979 GO:0003676
Mupr6961g00002 523 MobiDBLite consensus disorder prediction 101 115 - -
Mupr6961g00002 523 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 47 350 - -
Mupr6961g00002 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 335 IPR000504 GO:0003723
Mupr6961g00002 523 MobiDBLite consensus disorder prediction 1 115 - -
Mupr6961g00002 523 SMART rrm1_1 258 330 IPR000504 GO:0003723
Mupr6961g00002 523 SMART rrm1_1 162 234 IPR000504 GO:0003723
Mupr6961g00002 523 Gene3D - 46 243 IPR012677 -
Mupr6961g00002 523 MobiDBLite consensus disorder prediction 61 86 - -
Mupr6961g00002 523 MobiDBLite consensus disorder prediction 337 390 - -
Mupr6961g00002 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Mupr6961g00002 523 MobiDBLite consensus disorder prediction 1 28 - -
Mupr6961g00002 523 SUPERFAMILY RNA-binding domain, RBD 241 356 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6961g00002 Mupr-Chr6961 17504 19953 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6961g00002 253 336 C2H2 Transcription Factor Family AT2G19380 30.952 1.15e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6961g00002 K12741 - gmx:100783742 697.197