Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6960g00002 ATGTCACTGCGGGCTTTGAAGGAAACTCTGCGACCTTGCTCAACCGAGAAACCCTCTTCCTCTTCTTCTTTCTCTTCATCAATTATCCAAACACGCCCCAATTCAATTCTCCGCGATACCGATTCCCTCTGCTCAATTCCTAGAAAACCCCCTAAATCCTCTCTTTCCCACCAGCTTCGCCGCCTTCACGGTTCTCCTCTTCAACGTCACAATTCACTAACCCAAACACACTCCAAAACCCTACAACATCAAGAAGAAAAAGAAGAAGAAGAAGAACCAGAGATAAAGAGGACGAAATTCGCTTCACCCAAGTTGCCTCAGTTTCAATTTGACCACACTGGACCCTTTGAGCCTCTGCTCTTGTCTTCACATGGAGAATTTCCTGTCGTTCAGGTTCCTGCATCTATAAACTGTAGACTTCTTGAGCATCAAAGAGAGGGAGTGAGGTTTTTGTATGGTTTGTACAAGAACAATCATGGAGGCATACTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGAAGGACATTCTACCCTAAATGAAAACAGGGTAGAGAAGAGAGACCCTGCATTAATAATTTGCCCAACTTCTGTTATCCACAACTGGGAGAGTGAATTCTCCAAGTGGTCTAACTTCAGTGTTTCCATTTATCATGGTGCAAACCGGGATTTGATATATGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACATACAGGATTCGTGGAAGTTCCTTGTCAGATGTCAACTGGAACATTGTGATTATCGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCCCAAGACGCTATGGTCTCACTGGGACTATAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTTCGCGAGTTCTATGATGAACCCCTTAAGCATGGCCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGACAGTTCTTCATAAATACATGTTGAGAAGGACAAAGGAAGAGACCATTGGACATCTTATGATGGGGAAGGAAGATAACATCGTGTTTTGTGCCATGAGTGATGTGCAAAAGCGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGTGGTTGTGGTAGTCCTCTTACTCAAGTCGAATGCTGCAAGAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTGCATAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCCGATATTGATTTAGTGGGTGGGAGCACACATAATGAAAGTTTCATGGGACTCAGTGATGTGAAACATTGTGGCAAAATGCGAGCTCTTGAAAAACTATTGTTTTCATGGTTTTCACAGGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGTAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCGACTAATTTACGTCAATCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAACCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTCATGGTGTTCCGGCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTACTCCCGTCAGGTGTACAAACAGCAGCTCTCAAACATTGCTGTCTCTGGAAAGATGGAGAAACGATATTTTGAAGGTGTCCAGGATTGCAAGGAATTTCAAGGAGAGCTTTTTGGGATTTCCAATTTATTTCGAGACTTATCTGATAAGCTATTTACCAGCGAGATCATTGAATTGCATAAAGAAAATGGGCATGAAACAGAACAACCGGAAAAAGAAAATCTGTCTGAAGAAACAGGTTCATCAGTATCGGAGCTAGAAACCAGATTATGTAATAAATCTGCGAGGGCTGCAACAAGTAAACCAGATCTTGAAGACCTTGGCATTGTCTATACTCATCGCAATGAAGACATTGTCAACTTCGGACCTGGGATTCAAGGGAAAATAAATACCAGCATCCCTTCAAATGATAGCCTAGTCAAGCCAAGCATTTCTTTGGACCACCAAAGAAAAAAACCAGATTGTGTACCTAAAAAACAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGGCTTCTTGCTCAGTCTATGGGCATGGGAGAGCTTGCTTTTAGCAAATGGTTACTATCAGCAACACCACTGGAGAGAGAAAAAGTGCTTCTTGACTACAACAAGAAAAAGAAGATACCCAATGGTTGA 2631 0.4219 MSLRALKETLRPCSTEKPSSSSSFSSSIIQTRPNSILRDTDSLCSIPRKPPKSSLSHQLRRLHGSPLQRHNSLTQTHSKTLQHQEEKEEEEEPEIKRTKFASPKLPQFQFDHTGPFEPLLLSSHGEFPVVQVPASINCRLLEHQREGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFGKEGHSTLNENRVEKRDPALIICPTSVIHNWESEFSKWSNFSVSIYHGANRDLIYDKLEANGVEILITSFDTYRIRGSSLSDVNWNIVIIDEAHRLKNEKSKLYKACLEIKTPRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVTVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDVQKRVYRRMLQLPDIQCLINKNLPCGCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGSTHNESFMGLSDVKHCGKMRALEKLLFSWFSQGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVMVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHKENGHETEQPEKENLSEETGSSVSELETRLCNKSARAATSKPDLEDLGIVYTHRNEDIVNFGPGIQGKINTSIPSNDSLVKPSISLDHQRKKPDCVPKKQKVPLIDERKRTQYRLLAQSMGMGELAFSKWLLSATPLEREKVLLDYNKKKKIPNG 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6960g00002 876 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 323 IPR014001 -
Mupr6960g00002 876 MobiDBLite consensus disorder prediction 722 744 - -
Mupr6960g00002 876 SMART ultradead3 136 331 IPR014001 -
Mupr6960g00002 876 Gene3D - 385 745 IPR027417 -
Mupr6960g00002 876 MobiDBLite consensus disorder prediction 1 103 - -
Mupr6960g00002 876 PANTHER SNF2/RAD54 FAMILY MEMBER 41 812 - -
Mupr6960g00002 876 MobiDBLite consensus disorder prediction 722 736 - -
Mupr6960g00002 876 Pfam SNF2-related domain 156 413 IPR000330 GO:0005524|GO:0140658
Mupr6960g00002 876 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 532 685 IPR001650 -
Mupr6960g00002 876 Gene3D - 120 372 IPR038718 -
Mupr6960g00002 876 CDD SF2_C_SNF 523 652 - -
Mupr6960g00002 876 SMART helicmild6 558 641 IPR001650 -
Mupr6960g00002 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 373 IPR027417 -
Mupr6960g00002 876 Pfam Helicase conserved C-terminal domain 529 641 IPR001650 -
Mupr6960g00002 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 694 IPR027417 -
Mupr6960g00002 876 MobiDBLite consensus disorder prediction 13 79 - -
Mupr6960g00002 876 MobiDBLite consensus disorder prediction 80 99 - -
Mupr6960g00002 876 FunFam Switch 2 122 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6960g00002 Mupr-Chr6960 17290 23809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6960g00002 530 671 RAD5 or RAD16-like Gene Family AT5G43530 39.437 3.61e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr6960g00002 SNF2_N 1.2e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6960g00002 K20098 - gmx:100781003 1598.56