Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6956g00009 ATGCAGAATCACAGACTGAAGCAGCAGCAGCAACAACAACAAGCTCTGATGCAGCAAGCACTTCTCCAACAACAATCCCTCTACCACCCTGGCCTCCTTGCTCCACCTCAGGTTGGACCCCACTACTTCTCTCTTCATTTCCGATTATTGCTTCGATCTTCTTCTGTTGTCTCGATCTTCGAGTCTTGCCTTTTGCTTATTCGGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTGGGGAACATCCATACACAGGTAACTGAGCCGCTTTTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTCATTCATTATTTTGATCGGAGATCTGCTGCTCTTGCCATATTGTCTCTCAATGGAAGGCATTTATTTGGGCAGCCTATCAAAGTTAATTGGGCATATGCTAGTGGTCAGAGAGAGGATACGTCAGGTCACTACAACATATTTGTTGGTGATCTGAGTCCTGAGGTTACTGATGCTACGCTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCAGATGCCAGAGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTAATCAACAGGATGCACAAAGCGCTATAAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACGAAAGGTGCTGGTGGGAATGAAGAGAAGCAAAACTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAAGATGGTAAAGAGACATCTAACAGTGATGTTCCTGAGAATAATCCTCAGTATACTACTGTTTATGTCGGTAACCTTGCTTCAGAGGTAACACAACTAGATCTCCATCGCCACTTCCATGCTCTTGGAGCTGGAGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTACTCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCTCAGTCTCTTCTTTGTGGAAAACAAATGAAGTGCTCATGGGGGAGCAAGCCCACTCCGGCTGGAACTGCGTCAAATCCCCTTCCCCCACCTGCTGCTGCATCTCTGCCTGGTCTGTCTGCAACTGATCTTTTGGCATATGAGCGACAGCTAGCAATGAGCAAGATGGGTGGCGTCCATGCCTTGATGCATCCTCAAGGCCAACATCCTCTTAAACAAGCAGCCATTGGAGCCAGCCAGGCAATATATGATGGTGGATTCCAGAATGTTGCAGCTGCACAGCAAATGATGTACTACCAGTAA 1356 0.4624 MQNHRLKQQQQQQQALMQQALLQQQSLYHPGLLAPPQVGPHYFSLHFRLLLRSSSVVSIFESCLLLIRIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGNEEKQNSDAKSVVELTNGSSEDGKETSNSDVPENNPQYTTVYVGNLASEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSLLCGKQMKCSWGSKPTPAGTASNPLPPPAAASLPGLSATDLLAYERQLAMSKMGGVHALMHPQGQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6956g00009 451 CDD RRM1_PUB1 89 159 - -
Mupr6956g00009 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 244 IPR000504 GO:0003723
Mupr6956g00009 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 352 IPR000504 GO:0003723
Mupr6956g00009 451 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 155 IPR000504 GO:0003723
Mupr6956g00009 451 Gene3D - 170 272 IPR012677 -
Mupr6956g00009 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 161 IPR000504 GO:0003723
Mupr6956g00009 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 368 IPR000504 GO:0003723
Mupr6956g00009 451 FunFam Oligouridylate-binding protein 1C 270 372 - -
Mupr6956g00009 451 FunFam oligouridylate-binding protein 1-like isoform X2 170 265 - -
Mupr6956g00009 451 Gene3D - 1 169 IPR012677 -
Mupr6956g00009 451 SUPERFAMILY RNA-binding domain, RBD 71 165 IPR035979 GO:0003676
Mupr6956g00009 451 SMART rrm1_1 88 157 IPR000504 GO:0003723
Mupr6956g00009 451 SMART rrm1_1 173 246 IPR000504 GO:0003723
Mupr6956g00009 451 SMART rrm1_1 294 364 IPR000504 GO:0003723
Mupr6956g00009 451 MobiDBLite consensus disorder prediction 253 292 - -
Mupr6956g00009 451 MobiDBLite consensus disorder prediction 250 292 - -
Mupr6956g00009 451 CDD RRM2_PUB1 171 250 - -
Mupr6956g00009 451 SUPERFAMILY RNA-binding domain, RBD 282 373 IPR035979 GO:0003676
Mupr6956g00009 451 Gene3D - 273 373 IPR012677 -
Mupr6956g00009 451 SUPERFAMILY RNA-binding domain, RBD 166 256 IPR035979 GO:0003676
Mupr6956g00009 451 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 250 IPR000504 GO:0003723
Mupr6956g00009 451 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6956g00009 Mupr-Chr6956 61832 67216 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6956g00009 88 364 Eukaryotic Initiation Factors Gene Family AT1G49760 26.117 6.55e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6956g00009 K13201 - gmx:100781227 771.541