Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6927g00001 ATGGACGCTCCTCCTTCGTCTTCGCCGCCTCATGCGGAGCCCACGGCGGTGACCGTACGGCGAGCCTTGGAGCTCCTTCAGCTGAACGACCCCGTTTTGAGGGTCCAAGCGGCCAGGGATATCCGCCGCCTCACCAAGAACTCCCACCGGTGCCGTCGCCAGCTCCGCCAAGCCGTGGCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCGCTTCTTGCTCTGCTTAACCTCGCCGTCCAAGACGAAAAGAATAAAATTAGCATTGTGGAAGCAGGTGCATTAGAGCCAATAGTTAGTTTCCTCAAGTCACAAAATCCAAATCTGCAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGTCTCTCCAACCAACAAACCAATCATCAGTGCTTGTGGCACCATTCCTCTTCTTGTGAATGTTCTTAGAGATGGAACCCCACAAGCTAAAGTTGATGCTGTGACGGCTCTGTCTAGCTTATCAACACAACCTGAAAACCTCAGCATCATTCTCGAAACAAATGCAATGCCTTTTATAGTTGATCTTCTCAAAACTTGTAGAAAATCCTCAAAAATAGCTGAAAAATGCTCTTCATTGATAGAATCCTTGGTGGGTTATGAGGAGGGAAGAACTGCCCTAACATCTGAAGAAGGAGGGGTTCTTGCAGTTGTGGAAGTTCTCGAAAATGGAACTCCCCAAAGTAGGGAACATGCCGTTGGGGCACTGCTGACAATGTGCCAAAGTGATAGATGTAAATATAGGGAACCAATCCTTAGAGAAGGGGTTATTCCGGGACTTCTTGAGCTTACAGTTCAAGGAACCCCAAAGTCTCAGCCAAAAGCACGTACCCTTTTGCAGTTGCTAAGAGAGTCTCCATATTCAAGACCTGAAGTTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATCTCAAATTGACGCGGATGATCAATCTGGTAAAGCAAAGAAGATGCTAGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTACAACAAAGGGCCCTTGTTTGTACCCCCAGTGATATCTCTATTACAAGTTGTGCTTCTGAAGTTTCTTCAAAATAA 1122 0.4768 MDAPPSSSPPHAEPTAVTVRRALELLQLNDPVLRVQAARDIRRLTKNSHRCRRQLRQAVAPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKISIVEAGALEPIVSFLKSQNPNLQEYATASLLTLSVSPTNKPIISACGTIPLLVNVLRDGTPQAKVDAVTALSSLSTQPENLSIILETNAMPFIVDLLKTCRKSSKIAEKCSSLIESLVGYEEGRTALTSEEGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLENIVCDIISQIDADDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDISITSCASEVSSK 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6927g00001 373 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 99 136 IPR000225 GO:0005515
Mupr6927g00001 373 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 57 99 IPR000225 GO:0005515
Mupr6927g00001 373 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 140 182 IPR000225 GO:0005515
Mupr6927g00001 373 Gene3D - 11 356 IPR011989 -
Mupr6927g00001 373 FunFam U-box domain-containing protein 4 6 355 - -
Mupr6927g00001 373 PANTHER U BOX DOMAIN-CONTAINING 18 299 - -
Mupr6927g00001 373 SMART arm_5 47 86 IPR000225 GO:0005515
Mupr6927g00001 373 SMART arm_5 170 212 IPR000225 GO:0005515
Mupr6927g00001 373 SMART arm_5 213 254 IPR000225 GO:0005515
Mupr6927g00001 373 SMART arm_5 88 128 IPR000225 GO:0005515
Mupr6927g00001 373 SMART arm_5 129 169 IPR000225 GO:0005515
Mupr6927g00001 373 Pfam Armadillo/beta-catenin-like repeat 89 124 IPR000225 GO:0005515
Mupr6927g00001 373 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 225 IPR000225 GO:0005515
Mupr6927g00001 373 SUPERFAMILY ARM repeat 20 316 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6927g00001 Mupr-Chr6927 12661 16236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6927g00001 19 296 U-box Gene Family AT2G23140 33.571 5.90e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6927g00001 - - gmx:100793971 639.032