Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6908g00003 ATGGGCAATGAGTGGAACCTTCGGGTGATGTTCTTGAAACACCGCATTGGAGTTTTCAAGAAAGCGAGCTCGCTCGCGACCCTCTGTGGCGTGGACCTTGCTGTTATTGTGTTTTCACCTGCTAACCGACTTTTCTCATTTGGCAGCCCGAGTGTGCATTCCATTATCCAACGCTACACGGAGCAAGCCCCACCTCCCCTCCTTAGATTCGACCTCAATGAGGCCCACTACATCCCAGATGAGCGTGAACTCCACGCGCACCTTGACTATCTAGGAACTGAACCATTTGCTGAAGGCTACAGAGGGTCACTTATGGTGGGCCACACCGATTGA 333 0.5225 MGNEWNLRVMFLKHRIGVFKKASSLATLCGVDLAVIVFSPANRLFSFGSPSVHSIIQRYTEQAPPPLLRFDLNEAHYIPDERELHAHLDYLGTEPFAEGYRGSLMVGHTD 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6908g00003 110 PANTHER MADS BOX PROTEIN 3 78 - -
Mupr6908g00003 110 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mupr6908g00003 110 PRINTS MADS domain signature 13 28 IPR002100 GO:0003677|GO:0046983
Mupr6908g00003 110 PRINTS MADS domain signature 28 49 IPR002100 GO:0003677|GO:0046983
Mupr6908g00003 110 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Mupr6908g00003 110 Gene3D - 4 62 IPR036879 GO:0003677|GO:0046983
Mupr6908g00003 110 FunFam Agamous-like MADS-box protein AGL62 3 67 - -
Mupr6908g00003 110 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Mupr6908g00003 110 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6908g00003 Mupr-Chr6908 11010 11375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6908g00003 1 66 Type I MADS-box Gene Family AT5G60440 54.545 2.57e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr6908g00003 SRF-TF 5.6e-16 No_clan