Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6897g00001 ATGGAGGGGAAGGAGCAGGACGTTTCGTTGGGAGCCAACAAGTTCCCGGAGAGACAGCCGATTGGGACGGCGGCGCAGAGCCAAGACGATGGGAAGGACTACCAGGAGCCGGCACCGGCGCCGCTGATTGACCCGTCGGAGTTTACGTCATGGTCGTTCTACAGAGCAGGGATTGCAGAGTTCGTCGCCACTTTTCTGTTCCTTTACATCACCATCTTGACCGTCATGGGCGTCGTTAGTGCCCCCTCCAAGTGCCAAACTGTTGGAATTCAAGGTATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGGGGGTCACATAAACCCGGCGGTGACGTTTGGGCTTTTCTTGGCGAGGAAGCTGTCGTTGCCCAGGGCGCTGTTCTACATAGTGATGCAGGTGTTGGGTGCTATCTGTGGTGCTGGCGTCGTGAAGGGTTTCGAGGGAAAAACAAAGTACGGTTTATTGAATGGTGGTGCCAACTTTGTTGCTCCTGGTTACACCAAAGGTGATGGCCTTGGTGCTGAGATTGTTGGCACTTTTATCCTTGTTTACACCGTTTTCTCAGCCACCGATGCCAAGCGTAACGCTAGAGACTCTCACGTCCCCATTTTGGCACCCTTGCCTATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACCATCCCCATCACCGGAACCGGTATCAACCCTGCTCGCAGTCTTGGTGCTGCCATCATCTTCAACAAACACCTTGGCTGGCACGAACATTGGATCTTCTGGGTGGGACCATTCATTGGTGCAGCTCTCGCAGCTCTCTACCACCAGGTCGTAATTCGGGCAATTCCCTTCAAGTCCAAGTGGTGCGTGTGTCGCGTCATGGGCCAAACTCCGAGCATGGTGGCGATGGAGCGCACAGTGTTGCAGTTCTCTTCTTCGCAGAGCTTGTCGGCAAAAGTTCACCCTCTGGTCATCTTCAACATCTGTGATTGCTATGTCCGACGTCCCGATCAAGCGGAGCGCGTCATCGGAACGTTACTCGGCTCCATTCTCCCCGACGGAACTGTCGATGTTCGTAATTCCTATGCCGTTCCTCACAGCGAGTCCGTCGACCAGGTTGCTTTGGATATTGAGTATCACCACAGTATGTATTCAACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTACCCAATCCCATCCATTTAACTGTTGATACAGGATTCACAAAGGGAGCGGGTACCATAAGAGCATATGTTTCAAACAACTTATCTCTTGGAGATCGGCAAATTGCTGCACGATTTCAAGAAATTCCTTTAGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATTTGATACTCTGAAGGCAACTGCTGTTGACAAAATTCCCTCTGATTTAGAAGGGATGGAAGCATCAATGGGACATCTATTAGCCTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTATTGATCCAGACAACAAAATTGGGATATTTATATCAGATGCTGTAGGTTCCCTTCCCAAATTCCCCTCATCAGCTTTTGAGAAGCTTGTGAATGACAGCTTGCAGGTTTTTTGGGCTGACAAGAGTGTTTCATCCTTTCAGGATCACTTGCTCTTGCTATATTTATCAAGCATCACTAGGACACAGCTTAGCCTTGCCGAAAAGTTGAATACGGCTGCTCAGATT 1740 0.4989 MEGKEQDVSLGANKFPERQPIGTAAQSQDDGKDYQEPAPAPLIDPSEFTSWSFYRAGIAEFVATFLFLYITILTVMGVVSAPSKCQTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLPRALFYIVMQVLGAICGAGVVKGFEGKTKYGLLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKHLGWHEHWIFWVGPFIGAALAALYHQVVIRAIPFKSKWCVCRVMGQTPSMVAMERTVLQFSSSQSLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSILPDGTVDVRNSYAVPHSESVDQVALDIEYHHSMYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTKGAGTIRAYVSNNLSLGDRQIAARFQEIPLDLRMVEAERIGFDTLKATAVDKIPSDLEGMEASMGHLLALIDDIYKYVDDVVEGRIDPDNKIGIFISDAVGSLPKFPSSAFEKLVNDSLQVFWADKSVSSFQDHLLLLYLSSITRTQLSLAEKLNTAAQI 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6897g00001 580 CDD MPN_eIF3f 321 574 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mupr6897g00001 580 Gene3D Glycerol uptake facilitator protein. 40 290 IPR023271 -
Mupr6897g00001 580 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Mupr6897g00001 580 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 NCBIfam MIP family channel protein 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Mupr6897g00001 580 Gene3D Cytidine Deaminase, domain 2 307 470 - -
Mupr6897g00001 580 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 318 387 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mupr6897g00001 580 ProSiteProfiles MPN domain profile. 320 461 IPR037518 -
Mupr6897g00001 580 MobiDBLite consensus disorder prediction 1 38 - -
Mupr6897g00001 580 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Mupr6897g00001 580 SMART pad1_6 319 434 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mupr6897g00001 580 FunFam Eukaryotic translation initiation factor 3 subunit F 308 470 - -
Mupr6897g00001 580 Pfam Maintenance of mitochondrial structure and function 456 574 IPR024969 -
Mupr6897g00001 580 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 13 285 IPR034294 -
Mupr6897g00001 580 FunFam Probable aquaporin PIP1-2 40 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6897g00001 Mupr-Chr6897 8514 20962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6897g00001 1 289 Major Intrinsic Protein MIP AT4G23400 83.391 2.00e-165 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6897g00001 K09872 - gmx:100775766 563.533