Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6888g00001 ATGGCGATGGAAGTGGAGCAGAATCCGAATCAGCAATTAGGGTTTCCCTTCTGGAAACCCCTTCGTCGCAGGTTCGCACCCGACTCTCTTTTCTTCGCTCCCGGCAACCTCGAACGAGAACTTCTTGTCAAACAGGTTGCTTTGGAGTTAACAGAAGAGAAGCAACAGCTTGAGAATTGGATGCAAGAGGAAGGAAGGGAAGTCTTTTGTCCCATTGTTGGTTGCGGTGCACGCTTAACTTCAATGGAGAACTTTGAAAATCACTATAATGCAAGGCATACTGCATCCTGTTCTGTGTGCTCCAGAGTCTACCCAACATCTCGTTTGCTAAGCATACATGTGTCTGAAGTGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGTTACGATATGTATGAATGCTTAGTGGAAAGGTGTGGTTTGAAATTCAAAAGCTACAATAATAGGCGGCAGCATCTGATTGACAAGCATAAATTCCCCACCACATTCGAGTTTTTCAAGAAGGCTCAGCCTTCAAAGAAACAGAGATTGAAGTCCCAACGCAAACAAGCTGTTCGTAAGGAGGATGCTTCAGGAATGATGGAGGTGGAAAATGCAGCCATGGATGACCTTGTTTCAGCAGTCTCTAAATTGAGCACTTCTGACAACACCCCTTCATCTGTCAGCTTTGGTCGCCGCCACAAAGGCTTGTCATTTGTCCCTCGCACTGTTCAACGTGGAGGTGGATCAAACTCAACCGCATCCATGACAAAGAGATAA 762 0.458 MAMEVEQNPNQQLGFPFWKPLRRRFAPDSLFFAPGNLERELLVKQVALELTEEKQQLENWMQEEGREVFCPIVGCGARLTSMENFENHYNARHTASCSVCSRVYPTSRLLSIHVSEVHDSFFQAKVARGYDMYECLVERCGLKFKSYNNRRQHLIDKHKFPTTFEFFKKAQPSKKQRLKSQRKQAVRKEDASGMMEVENAAMDDLVSAVSKLSTSDNTPSSVSFGRRHKGLSFVPRTVQRGGGSNSTASMTKR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6888g00001 253 PANTHER UNCHARACTERIZED 12 241 IPR039258 -
Mupr6888g00001 253 MobiDBLite consensus disorder prediction 238 253 - -
Mupr6888g00001 253 ProSitePatterns Zinc finger C2H2 type domain signature. 135 158 IPR013087 -
Mupr6888g00001 253 MobiDBLite consensus disorder prediction 212 253 - -
Mupr6888g00001 253 Coils Coil 43 63 - -
Mupr6888g00001 253 SMART c2h2final6 133 158 IPR013087 -
Mupr6888g00001 253 SMART c2h2final6 68 93 IPR013087 -
Mupr6888g00001 253 SMART c2h2final6 95 118 IPR013087 -
Mupr6888g00001 253 ProSitePatterns Zinc finger C2H2 type domain signature. 97 118 IPR013087 -
Mupr6888g00001 253 Gene3D Classic Zinc Finger 42 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6888g00001 Mupr-Chr6888 2417 4428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6888g00001 1 249 C2H2 Transcription Factor Family AT5G14140 62.934 2.77e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr6888g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6888g00001 - - gmx:100819557 454.907