Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6857g00001 ATGGGGAGGAAGAAGTTGGAGATAAAGCGAATTGAGAACAAAAGCACACGGCAGATAACATTCTCGAAGAGGCGCAATGGATTGATGAAGAAAGCGCACGAGTTGTCCATTCTCTGCGACGCCAACGTGGCGCTCGTCGTCTTCTCCAGCACCGGGAAGCTCTTCGAGCTCAGTAACGGTGACAGGTACACGCAAATAGCACGTAGCAACAGAGTCATGTTATGCTACAAGTATTGTCAAATTGGAGTATTGATTCATGACGAGTTAGATTTGAAGCATATTAATAGATAA 291 0.4536 MGRKKLEIKRIENKSTRQITFSKRRNGLMKKAHELSILCDANVALVVFSSTGKLFELSNGDRYTQIARSNRVMLCYKYCQIGVLIHDELDLKHINR 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6857g00001 96 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mupr6857g00001 96 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 64 - -
Mupr6857g00001 96 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mupr6857g00001 96 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Mupr6857g00001 96 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mupr6857g00001 96 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mupr6857g00001 96 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mupr6857g00001 96 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Mupr6857g00001 96 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Mupr6857g00001 96 SUPERFAMILY SRF-like 1 69 IPR036879 GO:0003677|GO:0046983
Mupr6857g00001 96 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6857g00001 Mupr-Chr6857 4923 5726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6857g00001 1 66 MADS-box Gene Family AT5G10140 69.697 4.56e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mupr6857g00001 SRF-TF 2.1e-26 No_clan