Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6849g00002 ATGGAGGATTTGAAGAAGAGAAAGCTGGACGAAGAAGCAGGGAACGATGATTTTGTTTCCAAGGAAGAGCTTCGCTTCCTCATTGAACCTCTAGCTAAACCCCAGCTCGTTGACCTTCTAGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCTCTTCAGAAACTTTGCGTGCTGCATTTCAAGAACATGGGGAAATTGAGGAAGGAGCTGTCATCTATGATAAAGCAACAGGAAAATCCCGTGGCTATGGATTTATCACTTACAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCCCCTAGCAAGTTAATCGATGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGCGGAACAAGTAGTACTCCTGATCTTTCCCTGAGGAAGCTTTATATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATGCTGCTAAACTATTTTGCGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGCTTTGGCTTTGTCACGTACAAGACAGCAGAGGCTGCAAAGAAGGCCATAGATGACCTAGACAAGACTCTTGGGGGAAGGAATATAATTGTAAAATTTGCTGATTCCCACAAAGGTAAAAGTGGCCAGCCGCCATTTCCTGCTGGAGTGGTTCCAATGGCAGCCTTACCTATGACCTCGGGATATATGCAGCCTGGAAAAGGTCATGTCAATGCGGGGCCTCCAATCAATTACAGTTACCCCCAAACTGTAGCACCGTATTCTGCATCTCCTTATCCAAACCCTCCCACCGCACCCTCTCCCTATCCAACACAAGGGCAGATTCCTTATCCTCAATTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTACTCAACCTATTGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1014 0.4458 MEDLKKRKLDEEAGNDDFVSKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLRAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQQALRAPSKLIDGRLAVCNLACEGLSGTSSTPDLSLRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDLDKTLGGRNIIVKFADSHKGKSGQPPFPAGVVPMAALPMTSGYMQPGKGHVNAGPPINYSYPQTVAPYSASPYPNPPTAPSPYPTQGQIPYPQFSAKKDQHGFPPTQPIGMNNYPYYYPKQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6849g00002 337 FunFam UBP1-associated protein 2C-like 61 142 - -
Mupr6849g00002 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Mupr6849g00002 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 133 IPR000504 GO:0003723
Mupr6849g00002 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 221 IPR000504 GO:0003723
Mupr6849g00002 337 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 58 133 - -
Mupr6849g00002 337 MobiDBLite consensus disorder prediction 286 303 - -
Mupr6849g00002 337 Gene3D - 143 241 IPR012677 -
Mupr6849g00002 337 SMART rrm1_1 66 138 IPR000504 GO:0003723
Mupr6849g00002 337 SMART rrm1_1 157 229 IPR000504 GO:0003723
Mupr6849g00002 337 SUPERFAMILY RNA-binding domain, RBD 60 142 IPR035979 GO:0003676
Mupr6849g00002 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 133 IPR000504 GO:0003723
Mupr6849g00002 337 FunFam UBP1-associated protein 2C 143 241 - -
Mupr6849g00002 337 CDD RRM2_NsCP33_like 157 231 - -
Mupr6849g00002 337 Gene3D - 56 142 IPR012677 -
Mupr6849g00002 337 MobiDBLite consensus disorder prediction 286 324 - -
Mupr6849g00002 337 SUPERFAMILY RNA-binding domain, RBD 151 246 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6849g00002 Mupr-Chr6849 7879 11990 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6849g00002 148 267 C2H2 Transcription Factor Family AT2G19380 30.952 2.37e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6849g00002 K12741 - gmx:100776344 598.586