Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr6816g00003 ATGCAGGTTCAACAGGAATTACTTGTGCTTTCCAAGGATCAGATGATGATCAAAGGCAAGCGCACCAAGCGTCAAAGGACACCATCCCCTCTTAGGCTAGCCATGCCTAATTCAACGTCATGTAGCACCATCAATTCTATTGATAGTGTCGCAACTTCTTCTACAGTCGCTACCAACTCTACAATTGAACTAAGAGAAGATGAAGACATGGCGAATTGTCTTATTCTCTTAGCTCAAGGTAGGCACCACGTGGCAGCACAACCGCCACGCCACCACGACAAGTCAACAAATCTATACCTCTACGAATGCAAAACTTGCAACAGATGCTTCCCTTCATTCCAAGCACTCGGAGGACACAGAGCCAGCCACAAGAAACCTAAGCAAAACGGCACTTTTTCAGAAGCAGTTACTACTTTTGCAAACGTTGAAGATAATAATAATGATCGTTATGACCCCACCACAAGTACCACCCTCTCGTTGAAAACACCAAACGGGGCTAATAATTTGTGTAGCACCAGCACTGCCACAGCAACAAAAGCTAATAAAGTTCACGAGTGTTCTATATGTGGTGCTGAATTTTCATCTGGCCAAGCCTTGGGGGGCCACATGAGGCGGCACAGAACTCCTGTGAACGCTTCTTCAATGAGTGGTGGAAATAGTAACCGTGAGTTGCAAGAACCCAAGAAACCGTTGAAGTTGGACTTGAATCTTCCGGCACCGGAGGATGATCATAGAGAATCCAAGTTCTCGTTTCAGCAAAGAGAAAACGTTATTGTCTTCTCTCCTTCTTCTTTGGTGGATTGCCATTACTGA 813 0.4526 MQVQQELLVLSKDQMMIKGKRTKRQRTPSPLRLAMPNSTSCSTINSIDSVATSSTVATNSTIELREDEDMANCLILLAQGRHHVAAQPPRHHDKSTNLYLYECKTCNRCFPSFQALGGHRASHKKPKQNGTFSEAVTTFANVEDNNNDRYDPTTSTTLSLKTPNGANNLCSTSTATATKANKVHECSICGAEFSSGQALGGHMRRHRTPVNASSMSGGNSNRELQEPKKPLKLDLNLPAPEDDHRESKFSFQQRENVIVFSPSSLVDCHY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr6816g00003 270 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Mupr6816g00003 270 SMART c2h2final6 184 206 IPR013087 -
Mupr6816g00003 270 SMART c2h2final6 101 123 IPR013087 -
Mupr6816g00003 270 MobiDBLite consensus disorder prediction 225 249 - -
Mupr6816g00003 270 SUPERFAMILY beta-beta-alpha zinc fingers 100 206 IPR036236 -
Mupr6816g00003 270 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Mupr6816g00003 270 PANTHER ZINC FINGER PROTEIN ZAT5 25 253 - -
Mupr6816g00003 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Mupr6816g00003 270 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 206 IPR013087 -
Mupr6816g00003 270 MobiDBLite consensus disorder prediction 200 249 - -
Mupr6816g00003 270 Gene3D Classic Zinc Finger 98 206 - -
Mupr6816g00003 270 MobiDBLite consensus disorder prediction 209 223 - -
Mupr6816g00003 270 Pfam C2H2-type zinc finger 183 208 - -
Mupr6816g00003 270 Pfam C2H2-type zinc finger 101 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr6816g00003 Mupr-Chr6816 15515 16327 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr6816g00003 9 270 C2H2 Transcription Factor Family AT2G28200 41.967 1.89e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr6816g00003 zf-C2H2_6 5.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr6816g00003 - - gmx:100785596 370.163